Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003943 (idnD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003943 showshow history
Names
idnD ECDH10B_4460
Product
L-idonate 5-dehydrogenase, NAD-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4593206 4594237 1032 344
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002085 (IPR002085 (DEPRECATED) Alcohol dehydrogenase superfamily, zinc-type) Jul 2009
Automated Process Approved IPR013154 (IPR013154 Alcohol dehydrogenase, N-terminal) Jul 2009
Automated Process Approved IPR013149 (IPR013149 Alcohol dehydrogenase, C-terminal) Jul 2009
Automated Process Approved IPR011032 (IPR011032 GroES-like superfamily) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name idnD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013975
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4460 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product L-idonate 5-dehydrogenase, NAD-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002085 (DEPRECATED) Alcohol dehydrogenase superfamily, zinc-type Protein Sequence Similarity - InterPro Domain: IPR002085
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013154 Alcohol dehydrogenase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013154
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011032 GroES-like superfamily Protein Sequence Similarity - InterPro Domain: IPR011032
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013149 Alcohol dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013149
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0013975 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0013975
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002085
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004025 idnD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003835 idnD CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004568 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004411 idnD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009143 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081582 idnD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005692 idnD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009211 idnD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0013975 idnD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004356 idnD CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004740 idnD CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004883 idnD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003092 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002379 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008929 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005117 idnD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009107 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0014000 idnD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013242 idnD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006953 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009242 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007678 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004215 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007190 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008293 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009177 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006204 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004317 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004279 idnD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005666 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004549 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006519 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008800 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004128 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0103776 idnD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004650 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007365 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005610 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004834 idnD CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4588206 to 4599237
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003938yjgQCDSforward45871494588231Downstream
AEC-0003939yjgRCDScomplement45883924589894Downstream
AEC-0003940idnRCDScomplement45899724590970Downstream
AEC-0003941idnTCDScomplement45910374592356Downstream
AEC-0003942idnOCDScomplement45924184593182Downstream
AEC-0003943idnDCDScomplement45932064594237Matches
AEC-0003944idnKCDSforward45944544595017Upstream
AEC-0003945yjgBCDScomplement45950214596040Upstream
AEC-0004192leuXtRNAforward45962364596320Upstream
AEC-0004562KpLE2prophageforward45963714636440Upstream
AEC-0003946intBCDSforward45965814597771Upstream
AEC-0000057IS2.11repeat_regionforward45980124599342Upstream
AEC-0003947insC-6CDSforward45980584598468Upstream
AEC-0003948insD-6CDSforward45984264599331Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948