Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003966 (fecA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003966 showshow history
Names
fecA ECDH10B_4489
Product
KpLE2 phage-like element; ferric citrate outer membrane transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4614184 4616508 2325 775
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010105 (IPR010105 TonB-dependent siderophore receptor) Jul 2009
Automated Process Approved IPR012910 (IPR012910 TonB-dependent receptor, plug domain) Jul 2009
Automated Process Approved IPR000531 (IPR000531 TonB-dependent receptor-like, beta-barrel) Jul 2009
Automated Process Approved IPR011662 (IPR011662 Secretin/TonB, short N-terminal domain) Jul 2009
Automated Process Approved IPR010916 (IPR010916 TonB box, conserved site) Jul 2009
Automated Process Approved IPR010917 (IPR010917 TonB-dependent receptor, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0015891 siderophore transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0019867 outer membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011662
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015343 siderophore transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004872 (DEPRECATED) receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fecA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0014067
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4489 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product KpLE2 phage-like element; ferric citrate outer membrane transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012910 TonB-dependent receptor, plug domain Protein Sequence Similarity - InterPro Domain: IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010105 TonB-dependent siderophore receptor Protein Sequence Similarity - InterPro Domain: IPR010105
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000531 TonB-dependent receptor-like, beta-barrel Protein Sequence Similarity - InterPro Domain: IPR000531
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011662 Secretin/TonB, short N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR011662
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010917 TonB-dependent receptor, conserved site Protein Sequence Similarity - InterPro Domain: IPR010917
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010916 TonB box, conserved site Protein Sequence Similarity - InterPro Domain: IPR010916
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0014067 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0014067
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0015891 siderophore transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0019867 outer membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011662
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004872 (DEPRECATED) receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015343 siderophore transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004703 fecA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004421 fecA CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003140 fecA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006897 fecA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006210 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006013 fecA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007365 FecA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008296 fecA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009304 fecA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0014067 fecA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004384 fecA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061323 fecA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000598 fecA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004835 fecA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004847 fecA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004847 fecA CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001691 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4609184 to 4621508
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004562KpLE2prophageforward45963714636440Contains
AEC-0003960insO-2CDSforward46087894609385Downstream
AEC-0004103yjhWCDSforward46093824609624Downstream
AEC-0003961yjhVCDSforward46095514609964Downstream
AEC-0003962fecECDScomplement46105214611288Downstream
AEC-0003963fecDCDScomplement46112894612245Downstream
AEC-0003964fecCCDScomplement46122424613240Downstream
AEC-0003965fecBCDScomplement46132374614139Downstream
AEC-0003966fecACDScomplement46141844616508Matches
AEC-0003967fecRCDScomplement46165954617548Upstream
AEC-0003968fecICDScomplement46175454618066Upstream
AEC-0000060IS1F.1repeat_regionforward46183034619070Upstream
AEC-0003969insA-7CDSforward46183584618633Upstream
AEC-0004104insB-7_1CDSforward46185524618845Upstream
AEC-0004105insB-7_2CDSforward46188464619055Upstream
AEC-0003970yjhUCDScomplement46191694620155Upstream
AEC-0003971yjhFCDScomplement46205024621851Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948