Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0003986 (yjhA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0003986 showshow history
Names
yjhA ECDH10B_4514
Product
N-acetylnuraminic acid outer membrane channel protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 4638616 4639332 717 239
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009331 (IPR009331 Oligogalacturonate-specific porin) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yjhA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0014136
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4514 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product N-acetylnuraminic acid outer membrane channel protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR009331 Oligogalacturonate-specific porin Protein Sequence Similarity - InterPro Domain: IPR009331
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0014136 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0014136
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003995 nanC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004655 nanC CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004696 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004418 yjhA CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005962 nanC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007405 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081605 nanC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008701 nanC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007382 nanC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004922 nanC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009346 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003554 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009137 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007650 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009339 nanC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007648 nanC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010645 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006630 nanC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008457 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006815 nanC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006010 nanC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006153 nanC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005625 nanC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005284 nanC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029480 yjhA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005555 nanC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009224 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0014136 nanC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004409 yjhA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004688 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004827 nanC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135390 yjhA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001312 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0005016 yjhA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004754 yjhA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075789 yjhA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090421 yjhA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004479 yjhA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004861 yjhA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4633616 to 4644332
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004562KpLE2prophageforward45963714636440Downstream
AEC-0004107yjhXCDScomplement46336274633884Downstream
AEC-0003983yjhRpseudogeneforward46346224635862Downstream
AEC-0003984yjhSCDScomplement46364454637425Downstream
AEC-0003985yjhTCDScomplement46374904638596Downstream
AEC-0003986yjhACDScomplement46386164639332Matches
AEC-0000061IS10R.2repeat_regioncomplement46405894641917Upstream
AEC-0004400mdoBpseudogenecomplement46419184643926Upstream
AEC-0003987yjjACDScomplement46441804644674Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948