Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004005 (deoC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004005 showshow history
Names
deoC ECDH10B_4539
Product
2-deoxyribose-5-phosphate aldolase, NAD(P)-linked
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4661808 4662587 780 260
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011343 (IPR011343 Deoxyribose-phosphate aldolase) Jul 2009
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Jul 2009
Automated Process Approved IPR002915 (IPR002915 DeoC/FbaB/LacD aldolase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009264 deoxyribonucleotide catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011343
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011343
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002915
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004139 deoxyribose-phosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011343
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name deoC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0014371
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4539 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR011343 Deoxyribose-phosphate aldolase Protein Sequence Similarity - InterPro Domain: IPR011343
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002915 DeoC/FbaB/LacD aldolase Protein Sequence Similarity - InterPro Domain: IPR002915
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0014371 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0014371
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009264 deoxyribonucleotide catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011343
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011343
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004139 deoxyribose-phosphate aldolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011343
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002915
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000817 deoC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001129 deoC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018094 deoC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000706 deoC2 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000881 deoC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008579 deoC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004766 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006603 deoC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004539 deoC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009777 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008844 deoC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007661 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081684 deoC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009212 deoC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009519 deoC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004986 deoC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009415 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002909 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009217 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007730 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008234 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009085 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010726 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009217 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008538 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008736 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006091 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008319 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005706 deoC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005366 deoC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029554 deoC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008311 deoC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009303 deoC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0014371 deoC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004480 deoC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004764 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004921 deoC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135462 deoC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001396 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0005162 deoC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060959 deoC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000395 deoC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000186 deoC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0009047 deoC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003164 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005220 deoC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009220 deoC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0014266 deoC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013483 deoC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006869 deoC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009328 deoC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008134 deoC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004300 deoC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004781 deoC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008392 deoC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009268 deoC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006095 deoC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004415 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004376 deoC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005772 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004642 deoC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007406 deoC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008882 deoC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004208 deoC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0115239 deoC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086336 deoC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0104008 deoC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004547 deoC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008283 deoC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004259 deoC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004846 deoC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010345 deoC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006917 deoC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005264 deoC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0076033 deoC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090627 deoC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004691 deoC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004927 deoC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000046 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001734 deoC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002490 deoC2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002973 deoC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003398 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243295 deoC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004936 deoC1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004590 deoC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005855 deoC1 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002879 deoC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116802 deoC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005276 deoC1 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007591 deoC1 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002254 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005733 deoC1 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007302 deoC1 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033526 deoC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004686 deoC1 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000393 deoC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003824 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006815 deoC1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007513 deoC1 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000623 deoC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000719 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004296 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4656808 to 4667587
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004001yjjUCDSforward46568964657969Upstream
AEC-0004002yjjVCDSforward46579664658745Upstream
AEC-0004003yjjWCDScomplement46591654660028Upstream
AEC-0004004yjjICDScomplement46600004661550Upstream
AEC-0004005deoCCDSforward46618084662587Matches
AEC-0004006deoACDSforward46627144664036Downstream
AEC-0004196deoBCDSforward46640884665311Downstream
AEC-0004197deoDCDSforward46653684666087Downstream
AEC-0004198yjjJCDSforward46662544667585Downstream
AEC-0004199lplACDScomplement46675864668602Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948