Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004006 (deoA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004006 showshow history
Names
deoA ECDH10B_4540
Product
thymidine phosphorylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4662714 4664036 1323 441
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000053 (IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase) Jul 2009
Automated Process Approved IPR013465 (IPR013465 Thymidine phosphorylase) Jul 2009
Automated Process Approved IPR000312 (IPR000312 Glycosyl transferase, family 3) Jul 2009
Automated Process Approved IPR017459 (IPR017459 Glycosyl transferase family 3, N-terminal domain) Jul 2009
Automated Process Approved IPR013102 (IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006206 pyrimidine nucleobase metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000053
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006213 pyrimidine nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013102
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000312
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016763 pentosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013102
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009032 thymidine phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013465
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016757 glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000312
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name deoA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0014374
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4540 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product thymidine phosphorylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase Protein Sequence Similarity - InterPro Domain: IPR000053
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013465 Thymidine phosphorylase Protein Sequence Similarity - InterPro Domain: IPR013465
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017459 Glycosyl transferase family 3, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR017459
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013102
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000312 Glycosyl transferase, family 3 Protein Sequence Similarity - InterPro Domain: IPR000312
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0014374 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0014374
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006213 pyrimidine nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013102
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000312
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006206 pyrimidine nucleobase metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000053
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009032 thymidine phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013465
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016763 pentosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013102
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016757 glycosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000312
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001842 deoA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001661 deoA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018092 deoA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000707 deoA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000880 deoA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008580 deoA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004767 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006602 deoA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004540 deoA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009776 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008845 deoA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007662 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081685 deoA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009213 deoA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009520 deoA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004987 deoA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009416 deoA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002910 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009218 deoA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007731 deoA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008235 deoA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009084 deoA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010727 deoA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009216 deoA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008539 deoA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008737 deoA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006092 deoA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008320 deoA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005707 deoA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005367 deoA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029555 deoA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008310 deoA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009304 deoA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0014374 deoA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004481 deoA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004765 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004922 deoA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001397 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0005163 deoA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060960 deoA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000396 deoA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000187 deoA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004282 deoA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0009048 deoA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003163 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005222 deoA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009221 deoA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0014268 deoA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013485 deoA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006868 deoA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009329 deoA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008133 deoA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004301 deoA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004782 deoA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008393 deoA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009269 deoA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006094 deoA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004416 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004377 deoA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005773 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004643 deoA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007405 deoA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008883 deoA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004209 deoA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0115241 deoA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086337 deoA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0104011 deoA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004546 deoA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008284 deoA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004260 deoA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004847 deoA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010346 deoA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006916 deoA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005265 deoA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0076035 deoA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090628 deoA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004692 deoA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004928 deoA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000047 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001736 deoA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002489 deoA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002972 deoA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003397 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243294 deoA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004935 deoA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004588 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002256 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000395 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003823 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007512 deoA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000624 deoA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000720 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004295 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4657714 to 4669036
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004001yjjUCDSforward46568964657969Upstream
AEC-0004002yjjVCDSforward46579664658745Upstream
AEC-0004003yjjWCDScomplement46591654660028Upstream
AEC-0004004yjjICDScomplement46600004661550Upstream
AEC-0004005deoCCDSforward46618084662587Upstream
AEC-0004006deoACDSforward46627144664036Matches
AEC-0004196deoBCDSforward46640884665311Downstream
AEC-0004197deoDCDSforward46653684666087Downstream
AEC-0004198yjjJCDSforward46662544667585Downstream
AEC-0004199lplACDScomplement46675864668602Downstream
AEC-0004200ytjBCDScomplement46686304669274Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948