Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004019 (araH) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004019 showshow history
Names
araH ECDH10B_2039
Product
subunit of L-arabinose ABC transporter containing membrane components
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 2071586 2072575 990 330
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001851 (IPR001851 ABC transporter, permease) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name araH Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0174093
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2039 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product subunit of L-arabinose ABC transporter containing membrane components Published Sequence Analysis - PubMed ID: 2445996
Reference: Escherichia coli plasmid BEK180 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001851 ABC transporter, permease Protein Sequence Similarity - InterPro Domain: IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0174093 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0174093
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002478 araH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002365 araH CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015568 araH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001828 araH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004475 araH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008311 araH CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001852 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009630 araH CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001788 araH CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007404 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078431 araH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008381 araH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009358 araH CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006567 araH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000153 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006030 araH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010319 araH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009716 araH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006112 araH CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007475 araH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009132 araH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010634 araH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010301 araH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009915 araH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010025 araH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008102 rbsC_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006673 araH CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0174093 araH CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001947 araH CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002163 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001286 araH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003951 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002106 araH CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062535 araH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001325 araH CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000579 araH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000556 araH CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0001211 araH CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006419 araH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006813 araH CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001270 araH CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073147 araH CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0088230 araH CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002084 araH CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001314 araH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002789 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005895 araH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003009 rbsC_6 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003347 araH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000401 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239197 araH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006376 araH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001954 araH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004753 araH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001200 araH CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122764 araH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007101 araH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007666 araH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003032 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007457 araH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005969 araH CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031805 araH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005721 araH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002079 araH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001045 araH_2 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007106 araH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005854 araH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002260 araH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002668 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002361 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2066586 to 2077575
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0001784flhDCDScomplement20664562066815Downstream
AEC-0000032IS5.7repeat_regioncomplement20671042068298Downstream
AEC-0001785yecGCDSforward20687852069213Downstream
AEC-0001786otsACDScomplement20692202070644Downstream
AEC-0001787otsBCDScomplement20706192071419Downstream
AEC-0004019araHCDScomplement20715862072575Matches
AEC-0001788araGCDScomplement20725872074101Upstream
AEC-0001789araFCDScomplement20741712075160Upstream
AEC-0001790yecICDSforward20759572076460Upstream
AEC-0004078yecJCDScomplement20765392076790Upstream
AEC-0001791yecRCDSforward20772542077577Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948