Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004039 (frlC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004039 showshow history
Names
frlC ECDH10B_3548
Product
predicted isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 3598107 3598937 831 277
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013022 (IPR013022 Xylose isomerase-like, TIM barrel domain) Jul 2009
Automated Process Approved IPR012307 (IPR012307 (DEPRECATED) Xylose isomerase, TIM barrel domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name frlC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0174114
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3548 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted isomerase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013022 Xylose isomerase-like, TIM barrel domain Protein Sequence Similarity - InterPro Domain: IPR013022
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012307 (DEPRECATED) Xylose isomerase, TIM barrel domain Protein Sequence Similarity - InterPro Domain: IPR012307
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0174114 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0174114
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004493 frlC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004973 frlC CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008810 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007724 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0005718 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006389 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008810 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007145 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005381 CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008276 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004637 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008024 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0006537 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006083 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009917 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0009518 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005425 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007333 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005116 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0005185 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005026 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005511 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028390 frlC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008256 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0174114 frlC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003997 frlC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0003705 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134295 CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002567 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0003672 yhfP CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009169 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075685 yhfP CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0089627 yhfP CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003590 yhfP CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0003818 yhfP CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 3593107 to 3603937
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003135nirCCDSforward35927703593576Upstream
AEC-0003136cysGCDSforward35935953594968Upstream
AEC-0003137yhfLCDSforward35952153595382Upstream
AEC-0003138frlACDSforward35956773597014Upstream
AEC-0003139frlBCDSforward35970353598057Upstream
AEC-0004039frlCCDSforward35981073598937Matches
AEC-0003140frlDCDSforward35989343599719Overlaps Downstream
AEC-0003141frlRCDSforward35998193600550Downstream
AEC-0003142yhfSCDScomplement36007023601787Downstream
AEC-0003143yhfTCDScomplement36017993603103Downstream
AEC-0003144yhfUCDScomplement36031153603468Downstream
AEC-0003145phpCDScomplement36034793604357Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948