Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004040 (rffT) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004040 showshow history
Names
rffT ECDH10B_3982
Product
4-alpha-L-fucosyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4074468 4075547 1080 360
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR009993 (IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009246 enterobacterial common antigen biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009993
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009993
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008417 fucosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009993
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rffT Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0174115
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_3982 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 4-alpha-L-fucosyltransferase Published Annotation - Swiss-Prot Accession Number: P56258
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Protein Family
Automated Process Approved protein family IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase Protein Sequence Similarity - InterPro Domain: IPR009993
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0174115 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0174115
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009246 enterobacterial common antigen biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009993
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009993
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008417 fucosyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009993
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001336 rffT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001294 rffT CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0014978 rffT CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000227 wecF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0001684 wecF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007913 wecF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004026 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0007256 wecF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0003833 rffT CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0010436 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009564 wecF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006205 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0080906 wecF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009752 wecF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010112 wecF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004352 rffT CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0008738 wecF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002605 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0008555 wecF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007068 wecF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007259 wecF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009853 wecF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010059 wecF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008266 wecF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0007871 wecF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0005657 wecF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007498 wecF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009686 wecF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008724 wecF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006938 wecF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0028930 rffT CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009760 wecF CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0008696 wecF CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0174115 wecF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0003561 rffT CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004154 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004153 wecF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0134810 rffT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004763 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0004359 CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064533 rffT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002510 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001139 rffT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003440 rffT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008319 wecF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003908 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0004488 rffT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008559 wecF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012321 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010717 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007627 wecF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008613 wecF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008552 wecF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007521 wecF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008493 wecF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007707 wecF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008560 wecF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008863 wecF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003806 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0003765 rffT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0004892 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008734 wecF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008371 wecF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008205 wecF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007599 wecF CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0112674 rffT CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0085092 rffT CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0102104 rffT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005237 wecF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009113 wecF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008665 wecF CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004147 rffT CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0009546 wecF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007455 wecF CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0004465 rffT CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0075149 rffT CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090081 rffT CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0003942 yifM CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004319 rffT CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001940 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0000562 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003529 wecF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003090 rffT CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003325 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0241893 rffT CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004626 wecF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000205 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007657 wecF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003522 rffT CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128298 rffT CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006014 wecF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006463 wecF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000836 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009075 wecF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007228 wecF CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0029972 rffT CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006910 wecF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000138 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0004168 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0008318 wecF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0004122 wecF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000191 rffT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000222 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004778 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4069468 to 4080547
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0003521rffGCDSforward40694654070532Upstream
AEC-0003522rffHCDSforward40705514071432Upstream
AEC-0003523rffCCDSforward40714104072084Upstream
AEC-0003524rffACDSforward40720894073219Upstream
AEC-0003525wzxECDSforward40732214074471Overlaps Upstream
AEC-0004040rffTCDSforward40744684075547Matches
AEC-0003526wzyECDSforward40755444076896Overlaps Downstream
AEC-0003527rffMCDSforward40768994077639Downstream
AEC-0003528yifKCDSforward40778304079215Downstream
AEC-0004176argXtRNAforward40793184079394Downstream
AEC-0004177hisRtRNAforward40794524079528Downstream
AEC-0004178leuTtRNAforward40795494079635Downstream
AEC-0004179proMtRNAforward40796784079754Downstream
AEC-0003529aslBCDSforward40799014081136Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948