Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004085 (yfbW) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004085 showshow history
Names
yfbW ECDH10B_2418
Product
conserved protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 2461567 2461902 336 112
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000620 (IPR000620 EamA domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000620
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yfbW Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0285065
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_2418 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product conserved protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000620 EamA domain Protein Sequence Similarity - InterPro Domain: IPR000620
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0285065 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0285065
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000620
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001819 arnE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001819 arnE CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016241 arnE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002459 yfbW CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003277 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005223 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0002319 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0008962 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005220 arnE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0006981 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0006686 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006678 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0078937 arnE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006537 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0005875 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0002549 yfbW CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006988 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000626 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0006737 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0005262 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006704 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007780 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0008239 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0005693 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0006024 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006957 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007307 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006890 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0006185 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007479 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0027232 yfbW CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005097 arnE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0007076 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0285065 arnE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0002331 yfbW CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0002558 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002411 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0285153 arnE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000129 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0002547 CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063430 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004447 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002567 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000406 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006607 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002696 yfbW CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006910 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0007366 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0007003 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006227 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006904 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0006206 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0006638 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004285 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0006039 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006849 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007414 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000562 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000561 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000685 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0007091 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005091 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006608 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006583 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0110232 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082273 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0097352 CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0006979 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0004488 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006843 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0005157 arnE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0008043 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005921 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005641 arnE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0073609 CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0286366 arnE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0002496 CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0005431 arnE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000575 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006423 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000877 arnE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000209 arnE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001495 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239551 rhaT9 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006722 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002129 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004907 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001047 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123315 pmrL CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008308 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007774 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008890 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006158 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031619 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008033 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002254 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000868 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005696 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002412 pmrL CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002860 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002161 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 2456567 to 2466902
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0002122arnCCDSforward24560812457049Upstream
AEC-0002123arnACDSforward24570492459031Upstream
AEC-0002124yfbHCDSforward24590282459918Upstream
AEC-0002125arnTCDSforward24599182461570Overlaps Upstream
AEC-0004085yfbWCDSforward24615672461902Matches
AEC-0002126yfbJCDSforward24619022462288Overlaps Downstream
AEC-0002127pmrDCDScomplement24622822462548Downstream
AEC-0002128menECDScomplement24626582464013Downstream
AEC-0002129menCCDScomplement24640102464972Downstream
AEC-0002130menBCDScomplement24649722465829Downstream
AEC-0002131yfbBCDScomplement24658442466602Downstream
AEC-0002132menDCDScomplement24665992468269Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948