Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004197 (deoD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004197 showshow history
Names
deoD ECDH10B_4542
Product
purine-nucleoside phosphorylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4665368 4666087 720 240
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004402 (IPR004402 Purine nucleoside phosphorylase DeoD-type) Jul 2009
Automated Process Approved IPR000845 (IPR000845 Nucleoside phosphorylase domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006139 nucleobase-containing compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004402
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004731 purine-nucleoside phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004402
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name deoD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0014379
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4542 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product purine-nucleoside phosphorylase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004402 Purine nucleoside phosphorylase DeoD-type Protein Sequence Similarity - InterPro Domain: IPR004402
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000845 Nucleoside phosphorylase domain Protein Sequence Similarity - InterPro Domain: IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0014379 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0014379
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009116 nucleoside metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006139 nucleobase-containing compound metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004402
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000845
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004731 purine-nucleoside phosphorylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004402
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000640 deoD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000766 deoD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018089 deoD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000709 deoD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000878 deoD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008582 deoD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004769 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006600 deoD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004542 deoD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009774 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008847 deoD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007664 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081687 deoD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009215 deoD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009522 deoD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004989 deoD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009418 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002912 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009220 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007733 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008237 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009082 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010729 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009214 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008541 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008739 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006094 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008322 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005709 deoD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005369 deoD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029557 deoD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008308 deoD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009306 deoD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0014379 deoD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004483 deoD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004767 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004924 deoD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135465 deoD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001399 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0005165 deoD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060962 deoD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000391 deoD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000189 deoD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004284 deoD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0009050 deoD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003161 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005224 deoD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009223 deoD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0014277 deoD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013493 deoD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006866 deoD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009331 deoD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008131 deoD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004303 deoD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004784 deoD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008395 deoD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009271 deoD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006091 deoD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004418 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004379 deoD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005776 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004645 deoD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007403 deoD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008885 deoD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004211 deoD CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0115246 deoD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086339 deoD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0104017 deoD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004544 deoD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008286 deoD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004262 deoD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004849 deoD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010348 deoD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006914 deoD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005267 deoD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0076037 deoD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090630 deoD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004694 deoD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004930 deoD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000049 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001743 b4384 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002487 deoD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002970 deoD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003395 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243292 deoD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004933 deoD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004586 deoD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005858 deoD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002877 deoD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116809 deoD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005273 deoD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007594 deoD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001870 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005736 deoD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007299 deoD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033523 deoD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004683 deoD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000397 deoD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003821 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006812 deoD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007510 deoD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000626 deoD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000722 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004293 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4660368 to 4671087
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004004yjjICDScomplement46600004661550Upstream
AEC-0004005deoCCDSforward46618084662587Upstream
AEC-0004006deoACDSforward46627144664036Upstream
AEC-0004196deoBCDSforward46640884665311Upstream
AEC-0004197deoDCDSforward46653684666087Matches
AEC-0004198yjjJCDSforward46662544667585Downstream
AEC-0004199lplACDScomplement46675864668602Downstream
AEC-0004200ytjBCDScomplement46686304669274Downstream
AEC-0004201serBCDSforward46693804670348Downstream
AEC-0004202radACDSforward46703974671779Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948