Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004201 (serB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004201 showshow history
Names
serB ECDH10B_4546
Product
3-phosphoserine phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4669380 4670348 969 323
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004469 (IPR004469 Phosphoserine phosphatase) Jul 2009
Automated Process Approved IPR006383 (IPR006383 (DEPRECATED) HAD-superfamily hydrolase, subfamily IB, PSPase-like) Jul 2009
Automated Process Approved IPR005834 (IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006564 L-serine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004469
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006383
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004647 phosphoserine phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004469
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016791 phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006383
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name serB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0014393
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4546 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 3-phosphoserine phosphatase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004469 Phosphoserine phosphatase Protein Sequence Similarity - InterPro Domain: IPR004469
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006383 (DEPRECATED) HAD-superfamily hydrolase, subfamily IB, PSPase-like Protein Sequence Similarity - InterPro Domain: IPR006383
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005834 (DEPRECATED) Haloacid dehalogenase-like hydrolase Protein Sequence Similarity - InterPro Domain: IPR005834
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0014393 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0014393
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006383
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006564 L-serine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004469
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016791 phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006383
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005834
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004647 phosphoserine phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004469
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000772 serB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000815 serB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018604 serB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000712 serB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000874 serB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008586 serB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004773 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006596 serB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004546 serB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009769 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008851 serB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007668 serB pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081693 serB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009219 serB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009526 serB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0004993 serB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009422 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002915 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009223 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007736 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008240 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009079 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010732 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009211 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008544 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008742 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006097 serB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008325 serB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005712 serB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005372 serB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029561 serB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008304 serB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009310 serB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0014393 serB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004487 serB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004771 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004928 serB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135468 serB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001402 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0005169 serB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0060681 serB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000306 serB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000150 serB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002894 serB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0009060 serB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003158 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005229 serB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009228 serB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0014289 serB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013505 serB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006856 serB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009341 serB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008121 serB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004312 serB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004794 serB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008405 serB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009281 serB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006081 serB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004422 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004383 serB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005781 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004655 serB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007398 serB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008890 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004216 serB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0115253 serB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086343 serB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0104039 serB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004534 serB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008291 serB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004272 serB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004855 serB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010352 serB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006910 serB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005273 serB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0076041 serB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0090633 serB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004698 serB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004933 serB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000052 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001751 b4388 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002485 serB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002967 serB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003392 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243287 serB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004931 serB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004583 serB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005860 serB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002875 serB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116815 serB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005271 serB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007596 serB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001872 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005738 serB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007297 serB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033521 serB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004681 serB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000400 serB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003818 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006810 serB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007508 serB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000628 serB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000725 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004290 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4664380 to 4675348
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004196deoBCDSforward46640884665311Upstream
AEC-0004197deoDCDSforward46653684666087Upstream
AEC-0004198yjjJCDSforward46662544667585Upstream
AEC-0004199lplACDScomplement46675864668602Upstream
AEC-0004200ytjBCDScomplement46686304669274Upstream
AEC-0004201serBCDSforward46693804670348Matches
AEC-0004202radACDSforward46703974671779Downstream
AEC-0004203nadRCDSforward46718004673032Downstream
AEC-0004204yjjKCDScomplement46733404675007Downstream
AEC-0004205sltCDSforward46752184677155Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948