Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004208 (ytjC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004208 showshow history
Names
ytjC ECDH10B_4553
Product
phosphoglyceromutase 2, co-factor independent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 4678282 4678929 648 216
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013078 (IPR013078 Histidine phosphatase superfamily, clade-1) Jul 2009
Automated Process Approved IPR001345 (IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001345
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001345
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ytjC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0014416
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_4553 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product phosphoglyceromutase 2, co-factor independent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013078 Histidine phosphatase superfamily, clade-1 Protein Sequence Similarity - InterPro Domain: IPR013078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site Protein Sequence Similarity - InterPro Domain: IPR001345
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0014416 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0014416
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001345
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001345
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001498 ytjC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001520 ytjC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015163 ytjC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000733 gpmB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000867 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008594 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0004782 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006588 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0004555 gpmB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009761 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008858 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007677 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081702 ytjC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009227 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009534 CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0009429 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002923 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009231 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007744 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008248 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009071 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0010740 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009203 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008552 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008750 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006105 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008333 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005720 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0005380 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0029568 ytjC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008294 pspB_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0009318 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0014416 ytjC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0004494 ytjC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0004779 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0004937 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0135475 ytjC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001410 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0005178 gpmB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064214 ytjC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002269 gpmB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001004 gpmB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002272 ytjC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0009067 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003151 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005237 ytjC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0009235 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0014311 gpmB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0013528 gpmB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006849 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0009348 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008114 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004319 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004801 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008412 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0009288 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006074 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0004429 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0004390 ytjC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005788 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004662 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007391 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008897 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004223 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0115273 ytjC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0086350 ytjC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0104059 ytjC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004527 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008298 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004279 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0004862 gpmB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0010360 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006903 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0005280 gpmB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0076050 ytjC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0256182 ytjC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0004705 gpmB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0004940 ytjC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000067 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001802 gpmB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000265 gpmB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003259 ytjC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001825 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243260 ytjC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004919 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004824 ytjC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005872 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002865 ytjC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116864 ytjC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005259 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007608 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001560 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005750 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007285 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033506 ytjC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004669 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000416 ytjC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003802 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007784 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007496 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000640 ytjC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000740 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004275 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 4673282 to 4683929
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004204yjjKCDScomplement46733404675007Upstream
AEC-0004205sltCDSforward46752184677155Upstream
AEC-0004206trpRCDSforward46772454677571Upstream
AEC-0004207yjjXCDScomplement46777184678230Upstream
AEC-0004208ytjCCDSforward46782824678929Matches
AEC-0004209robCDScomplement46789264679795Overlaps Downstream
AEC-0004210creACDSforward46800064680479Downstream
AEC-0004211creBCDSforward46804924681181Downstream
AEC-0004212creCCDSforward46811814682605Downstream
AEC-0004213creDCDSforward46826634684015Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948