Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004393 (rihA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004393
Names
rihA ECDH10B_0720
Product
ribonucleoside hydrolase 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 735292 736227 936 312
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR015910 (IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site) Jul 2009
Automated Process Approved IPR001910 (IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rihA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002227
Reference: Escherichia coli K-12 MG1655 		Dec 2007
Person Approved locus tag ECDH10B_0720 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ribonucleoside hydrolase 1 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002227
Reference: Escherichia coli K-12 MG1655 		Dec 2007
Protein Family
Automated Process Approved protein family IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain Protein Sequence Similarity - InterPro Domain: IPR001910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site Protein Sequence Similarity - InterPro Domain: IPR015910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment duplicate copy of AEC-0000645 Nucleotide Sequence Similarity - ASAP FeatureID: AEC-0000645
Reference: Escherichia coli K-12 MG1655 		Dec 2007
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002227 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002227
Reference: Escherichia coli K-12 MG1655 		Dec 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002435 rihA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002302 rihA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 730292 to 741227
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004523repeat_regionforward514341740860Contains
AEC-0004388djlBCDSforward729230730657Downstream
AEC-0004389ybeTCDScomplement730667731221Downstream
AEC-0004390ybeUCDSforward731323732030Downstream
AEC-0004391djlCCDSforward732027733478Downstream
AEC-0004392hscCCDScomplement733538735208Downstream
AEC-0004393rihACDScomplement735292736227Matches
AEC-0004394gltLCDScomplement736345737070Upstream
AEC-0004395gltKCDScomplement737070737744Upstream
AEC-0004396gltJCDScomplement737744738484Upstream
AEC-0004397gltICDScomplement738654739562Upstream
AEC-0004398IS5.15repeat_regioncomplement739666740860Upstream
AEC-0004399CDScomplement739812740828Upstream
AEC-0000651lntCDScomplement741158742696Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948