Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004407 (murE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004407
Names
murE ECDH10B_0067
Product
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 67270 68757 1488 496
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013221 (IPR013221 Mur ligase, central) Jul 2009
Automated Process Approved IPR004101 (IPR004101 Mur ligase, C-terminal) Jul 2009
Automated Process Approved IPR000713 (IPR000713 Mur ligase, N-terminal catalytic domain) Jul 2009
Automated Process Approved IPR005761 (IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0051301 cell division GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008360 regulation of cell shape GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016881 acid-amino acid ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name murE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000311
Reference: Escherichia coli K-12 MG1655 		Oct 2007
Person Approved locus tag ECDH10B_0067 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000311
Reference: Escherichia coli K-12 MG1655 		Oct 2007
Protein Family
Automated Process Approved protein family IPR000713 Mur ligase, N-terminal catalytic domain Protein Sequence Similarity - InterPro Domain: IPR000713
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013221 Mur ligase, central Protein Sequence Similarity - InterPro Domain: IPR013221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004101 Mur ligase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR004101
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase Protein Sequence Similarity - InterPro Domain: IPR005761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Uncurated note contains a synonymous change in codon 371 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0000311
Reference: Escherichia coli K-12 DH10B 		Oct 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009252 peptidoglycan biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008360 regulation of cell shape GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009273 peptidoglycan-based cell wall biogenesis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0051301 cell division GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016881 acid-amino acid ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013221
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016874 ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004101
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000280 murE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000010 murE CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018266 murE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000790 murE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000767 murE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008703 murE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000088 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006490 murE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000080 murE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009656 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009072 murE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008060 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076167 murE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009500 murE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009792 murE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000095 murE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004538 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002560 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009333 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0007843 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008525 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009512 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0004933 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009502 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008655 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007655 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010718 murE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009583 murE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009201 murE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009878 murE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024001 murE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009934 murE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0004773 murE CDS
Automated Process Uncurated Go view Escherichia coli K-12 MG1655 ABE-0000311 murE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000087 murE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000088 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000091 murE CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0129968 murE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0001515 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000095 murE CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064137 murE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002198 murE CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0004209 murE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003949 murE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004321 murE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0003025 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000143 murE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004411 murE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0000413 murE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0000398 murE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0006702 murE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004503 murE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007184 murE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004470 murE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004948 murE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008559 murE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004508 murE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005922 murE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0000127 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0000126 murE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0000161 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0004808 murE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005991 murE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004233 murE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004377 murE CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0105557 murE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0081838 murE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091019 murE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0004379 murE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007174 murE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004429 murE CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000079 murE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005476 murE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007226 murE CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000126 murE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071015 murE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086446 murE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000081 murE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000101 murE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001552 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002051 murE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000200 murE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002611 murE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001616 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243058 murE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007038 murE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004237 murE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005970 murE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002771 murE CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0117186 murE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005154 murE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008578 murE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003440 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007114 murE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007723 murE CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033409 murE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007957 murE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000520 murE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003701 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007543 murE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007407 murE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000725 murE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000843 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004175 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 62270 to 73757
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004217hepApseudogenecomplement6035862378Upstream
AEC-0000070misc_featureforward6237862379Upstream
AEC-0004403fruRpseudogeneforward6237963136Upstream
AEC-0004404mraZCDSforward6373864196Upstream
AEC-0004405mraWCDSforward6419865139Upstream
AEC-0000129ftsLCDSforward6513665501Upstream
AEC-0004406ftsICDSforward6551767283Overlaps Upstream
AEC-0004407murECDSforward6727068757Matches
AEC-0000130murFCDSforward6875470112Overlaps Downstream
AEC-0000131mraYCDSforward7010671188Downstream
AEC-0000132murDCDSforward7119172507Downstream
AEC-0000133ftsWCDSforward7250773751Downstream
AEC-0000134murGCDSforward7374874815Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948