Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004421 (icd) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004421
Names
icd icdA ECDH10B_1208
Product
isocitrate dehydrogenase, specific for NADP+
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1249791 1251041 1251 417
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001804 (IPR001804 (DEPRECATED) Isocitrate and isopropylmalate dehydrogenases family) Jul 2009
Automated Process Approved IPR004439 (IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name icd Published Sequence Analysis - PubMed ID: 3112144
Reference: Escherichia coli K-12 		Jan 2008
Person Approved synonym icdA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003823
Reference: Escherichia coli K-12 MG1655 		Dec 2007
Person Approved locus tag ECDH10B_1208 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product isocitrate dehydrogenase, specific for NADP+ Protein Sequence Similarity - ASAP FeatureID: ABE-0003823
Reference: Escherichia coli K-12 MG1655 		Dec 2007
Protein Family
Automated Process Approved protein family IPR001804 (DEPRECATED) Isocitrate and isopropylmalate dehydrogenases family Protein Sequence Similarity - InterPro Domain: IPR001804
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic Protein Sequence Similarity - InterPro Domain: IPR004439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Uncurated note the sequence of icd in DH10B differs from that in MG1655 and W3110 by 12 base substitutions because it is a recombinant of icdA and icdC resulting from the excision of the e14 prophage Published Annotation - PubMed ID: 2661545
Reference: Escherichia coli K-12 		Jan 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001323 icd CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000544 icd CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017756 icd CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002013 icd CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003764 icd CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006016 icd CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001141 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009745 icd CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001052 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008277 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009282 icd CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008703 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077625 icd CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010535 icd CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010229 icd CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001359 icd CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005741 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003979 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010313 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009347 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009003 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007847 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006438 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008648 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010226 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008419 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010416 icd CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008136 icd CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008169 icd CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007912 icd CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025660 icd CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008223 icd_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005934 icd CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003823 icd CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001148 icd CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001229 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001988 icd CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131557 icd CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002456 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001269 icdA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062703 icd CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001308 icd CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001824 icd CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004299 icd CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006120 icd CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001828 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001398 icd CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006397 icd CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005889 icdA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005685 icdA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008578 icd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005719 icd CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007946 icd CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0008148 icd CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007471 icd CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004810 icd CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005708 icd CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008467 icd CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001624 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001612 icd CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002288 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005887 icd CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008813 icd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005405 icd CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008311 icd CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107682 icd CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083396 icd CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094262 icd CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008208 icd CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008506 icd CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006246 icd CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002111 icdA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006718 icd CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006318 icd CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002329 icdA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072290 icd CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087497 icd CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001243 icdA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001240 icd CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000413 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005141 icd CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003313 icdA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000080 icd CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000066 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238552 icd CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006963 icd CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002281 icd CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005031 icd CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001758 icdA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0120751 icd CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004772 icd CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005716 icd CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007837 icd CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007615 icd CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031497 icd CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007653 icd CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002402 icd CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002171 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007978 icd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005582 icd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002514 icd CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002999 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002022 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1244791 to 1256041
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004443phoPCDScomplement12444441245115Upstream
AEC-0001081purBCDScomplement12452841246654Upstream
AEC-0001082hflDCDScomplement12466581247299Upstream
AEC-0001083mnmACDScomplement12473351248441Upstream
AEC-0001084nudJCDScomplement12484951248956Upstream
AEC-0001085rluECDScomplement12489661249619Upstream
AEC-0004421icdCDSforward12497911251041Matches
AEC-0004444misc_featureforward12508871250888Contained Within
AEC-0001086elbACDScomplement12511441251467Downstream
AEC-0001087ycgXCDScomplement12521671252571Downstream
AEC-0001088ycgECDScomplement12527921253523Downstream
AEC-0001089ycgFCDScomplement12537281254939Downstream
AEC-0001090ycgZCDSforward12552531255489Downstream
AEC-0001091ymgACDSforward12555321255804Downstream
AEC-0001092ymgBCDSforward12558331256099Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948