Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004429 (galE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004429
Names
galE ECDH10B_0827
Product
UDP-glucose-4-epimerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 844190 845206 1017 339
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR005886 (IPR005886 UDP-glucose 4-epimerase) Jul 2009
Automated Process Approved IPR001509 (IPR001509 NAD-dependent epimerase/dehydratase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006012 galactose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005886
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003978 UDP-glucose 4-epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005886
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name galE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002575
Reference: Escherichia coli K-12 MG1655 		Dec 2007
Person Approved locus tag ECDH10B_0827 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product UDP-glucose-4-epimerase Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002575
Reference: Escherichia coli K-12 MG1655 		Dec 2007
Protein Family
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005886 UDP-glucose 4-epimerase Protein Sequence Similarity - InterPro Domain: IPR005886
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001509 NAD-dependent epimerase/dehydratase Protein Sequence Similarity - InterPro Domain: IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Gene Ontology
Automated Process Approved GO biological process GO:0006012 galactose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005886
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0044237 cellular metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001509
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003978 UDP-glucose 4-epimerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005886
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000845 galE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000075 galE CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020562 galE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001387 galE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000178 galE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009112 galE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000777 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005755 galE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000665 galE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008815 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009496 galE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008839 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076926 galE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007987 galE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009444 galE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000676 CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005232 galE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001913 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009565 galE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008614 galE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005879 galE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008365 galE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005702 galE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009073 galE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008979 galE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006648 galE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008925 galE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008521 galE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007240 galE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024758 galE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009455 galE_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005492 galE CDS
Automated Process Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002575 galE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000766 galE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000836 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000781 galE CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130696 galE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005439 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000758 CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061643 galE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004032 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000372 galE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004123 galE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004990 galE CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000929 galE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005145 galE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002447 galE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002371 galE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008116 galE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005268 galE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004625 galE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007222 galE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005186 galE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004394 galE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005210 galE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007735 galE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001988 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001976 galE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002758 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005497 galE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005860 galE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005015 galE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006038 galE CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106871 galE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083825 galE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092874 galE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008693 galE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006440 galE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008481 galE CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000660 galE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006077 galE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007979 galE CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000790 galE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071540 galE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086893 galE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000615 galE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000762 galE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002913 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008423 galD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002338 galD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003613 galE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003131 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236629 galE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005523 galE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001274 galE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005203 galE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002227 galE CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118993 galE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008043 galE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004804 galE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003281 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007650 galE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005382 galE CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032790 galE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005498 galE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003439 galE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003072 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006346 galE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006845 galE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001239 galE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001476 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003496 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 839190 to 850206
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000727gpmACDScomplement838658839410Downstream
AEC-0000728galMCDScomplement839612840652Downstream
AEC-0004427galKpseudogenecomplement840646841633(Interval #2) Downstream
AEC-0000020IS2.2repeat_regioncomplement841632842962Downstream
AEC-0004427galKpseudogenecomplement842970843130(Interval #1) Downstream
AEC-0004428galTCDScomplement843134844180Downstream
AEC-0004429galECDScomplement844190845206Matches
AEC-0000729modFCDScomplement845467846939Upstream
AEC-0000730modECDScomplement847007847795Upstream
AEC-0000731ybhTCDSforward847924848073Upstream
AEC-0000732modACDSforward848240849013Upstream
AEC-0000733modBCDSforward849013849702Upstream
AEC-0000734modCCDSforward849705850763Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948