Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004431 (bioA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004431
Names
bioA ECDH10B_0842
Product
adenosylmethionine-8-amino-7-oxononanoate aminotransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 861119 862408 1290 430
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005814 (IPR005814 Aminotransferase class-III) Jul 2009
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Jul 2009
Automated Process Approved IPR005815 (IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA) Jul 2009
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009102 biotin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005815
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0004015 adenosylmethionine-8-amino-7-oxononanoate transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005815
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name bioA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002635
Reference: Escherichia coli K-12 MG1655
Jan 2008
Person Approved locus tag ECDH10B_0842 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product adenosylmethionine-8-amino-7-oxononanoate aminotransferase Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002635
Reference: Escherichia coli K-12 MG1655
Jan 2008
Protein Family
Automated Process Approved protein family IPR005814 Aminotransferase class-III Protein Sequence Similarity - InterPro Domain: IPR005814
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA Protein Sequence Similarity - InterPro Domain: IPR005815
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Uncurated note contains the nonsynonymous change W14L Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002635
Reference: Escherichia coli K-12 MG1655
Jan 2008
Gene Ontology
Automated Process Approved GO biological process GO:0009102 biotin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005815
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0004015 adenosylmethionine-8-amino-7-oxononanoate transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005815
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000342 bioA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000418 bioA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020207 bioA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002336 bioA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000112 bioA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009096 bioA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000795 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005737 bioA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000679 bioA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008777 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009837 bioA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008823 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076944 bioA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010605 bioA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000768 bioA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005283 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001980 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009624 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008673 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005940 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008424 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005762 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009013 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009499 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009039 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006709 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008984 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008461 bioA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007301 bioA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024816 bioA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009472 bioA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005507 bioA CDS
Automated Process Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002635 bioA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000781 bioA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000851 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000796 bioA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130765 bioA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005506 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000774 bioA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063099 bioA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004107 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000729 bioA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004389 bioA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005007 bioA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002243 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000946 bioA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005162 bioA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002505 bioA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002426 bioA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008099 bioA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005285 bioA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004642 bioA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007242 bioA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005203 bioA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004411 bioA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005227 bioA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007752 bioA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001971 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001959 bioA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002739 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005514 bioA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005843 bioA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005032 bioA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006055 bioA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106913 bioA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083808 bioA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092930 bioA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008647 bioA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006418 bioA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008498 bioA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000722 bioA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007989 bioA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007933 bioA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000937 bioA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071765 bioA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087081 bioA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000800 bioA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000813 bioA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002403 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008393 bioA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002328 bioA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003399 bioA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002895 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236601 bioA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005534 bioA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001287 bioA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005214 bioA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002217 bioA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119030 bioA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008054 bioA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004793 bioA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003501 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007662 bioA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005371 bioA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032779 bioA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005487 bioA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003426 bioA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003059 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006335 bioA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006835 bioA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001249 bioA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001490 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003482 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 856119 to 867408
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000739ybhICDSforward855038856471Downstream
AEC-0000740ybhJCDSforward856654858915Downstream
AEC-0000741ybhCCDScomplement859149860432Downstream
AEC-0004430attLAMmisc_featureforward860479860493Downstream
AEC-0000742ybhBCDScomplement860584861060Downstream
AEC-0004431bioACDScomplement861119862408Matches
AEC-0000743bioBCDSforward862495863535Upstream
AEC-0000744bioFCDSforward863532864686Upstream
AEC-0000745bioCCDSforward864673865428Upstream
AEC-0000746bioDCDSforward865421866098Upstream
AEC-0000747uvrBCDSforward866677868698Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948