Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004433 (lpxK) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004433
Names
lpxK ECDH10B_0985
Product
lipid A 4'kinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1021517 1022503 987 329
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003758 (IPR003758 Tetraacyldisaccharide 4'-kinase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003758
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009029 tetraacyldisaccharide 4'-kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003758
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lpxK Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003115
Reference: Escherichia coli K-12 MG1655 		Jan 2008
Person Approved locus tag ECDH10B_0985 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product lipid A 4'kinase Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003115
Reference: Escherichia coli K-12 MG1655 		Jan 2008
Protein Family
Automated Process Approved protein family IPR003758 Tetraacyldisaccharide 4'-kinase Protein Sequence Similarity - InterPro Domain: IPR003758
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Uncurated EC number 2.7.1.130 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003115
Reference: Escherichia coli K-12 MG1655 		Jan 2008
Person Uncurated note contains the nonsynonymous change D158N Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003115
Reference: Escherichia coli K-12 MG1655 		Jan 2008
Gene Ontology
Automated Process Approved GO biological process GO:0009245 lipid A biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003758
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009029 tetraacyldisaccharide 4'-kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003758
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000564 lpxK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000457 lpxK CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019396 lpxK CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002207 lpxK CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004627 lpxK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007987 lpxK CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000934 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005567 lpxK CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000863 lpxK CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008551 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007961 lpxK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007209 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009393 lpxK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008434 lpxK CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000955 lpxK CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005457 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003640 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009779 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008828 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010642 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0009280 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005916 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008825 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009671 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008935 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009325 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008536 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009092 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007649 lpxK CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025079 lpxK CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007175 lpxK CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005700 lpxK CDS
Automated Process Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003115 lpxK CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000924 lpxK CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000999 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002204 lpxK CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130912 lpxK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005680 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000989 lpxK CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062820 lpxK CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003666 lpxK CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003930 lpxK CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001955 lpxK CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005169 lpxK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002076 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001118 lpxK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005323 lpxK CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0003027 lpxK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002928 lpxK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007939 lpxK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005447 lpxK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007438 lpxK CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007401 lpxK CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007713 lpxK CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004598 lpxK CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005387 lpxK CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007922 lpxK CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001825 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001813 lpxK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002542 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005676 lpxK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008110 lpxK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005188 lpxK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006380 lpxK CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107223 lpxK CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083663 lpxK CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093514 lpxK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008479 lpxK CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008263 lpxK CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008976 lpxK CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002443 ycaH CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007821 lpxK CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0003700 lpxK CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002697 ycaH CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072004 lpxK CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087263 ycaH CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000970 ycaH CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000986 lpxK CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001419 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004699 lpxK CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001334 lpxK CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000966 lpxK CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000636 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237029 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006073 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000846 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005516 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002016 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119984 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006273 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004521 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002101 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008303 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005064 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032515 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005215 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003097 lpxK CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002754 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005874 lpxK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006561 lpxK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001493 lpxK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001812 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003154 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1016517 to 1027503
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000877rpsACDSforward10151461016819Upstream
AEC-0000878ihfBCDSforward10169791017263Upstream
AEC-0000879ycaICDSforward10174711019735Upstream
AEC-0000880msbACDSforward10197721021520Overlaps Upstream
AEC-0004433lpxKCDSforward10215171022503Matches
AEC-0000881ycaQCDSforward10225401023772Downstream
AEC-0000882ycaRCDSforward10238241024006Downstream
AEC-0000883kdsBCDSforward10240031024749Downstream
AEC-0000884ycbJCDSforward10249031025796Downstream
AEC-0000885ycbCCDScomplement10257731026552Downstream
AEC-0000886smtACDSforward10266881027473Downstream
AEC-0000887mukFCDSforward10274701028792Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948