Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004435 (appB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004435
Names
appB ECDH10B_1049
Product
cytochrome bd-II oxidase, subunit II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1092447 1093583 1137 379
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003317 (IPR003317 Cytochrome ubiquinol oxidase subunit 2) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003317
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name appB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003302
Reference: Escherichia coli K-12 MG1655 		Jan 2008
Person Approved locus tag ECDH10B_1049 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product cytochrome bd-II oxidase, subunit II Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003302
Reference: Escherichia coli K-12 MG1655 		Jan 2008
Protein Family
Automated Process Approved protein family IPR003317 Cytochrome ubiquinol oxidase subunit 2 Protein Sequence Similarity - InterPro Domain: IPR003317
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Uncurated EC number 1.10.3.- Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003302
Reference: Escherichia coli K-12 MG1655 		Jan 2008
Person Uncurated note contains synonymous changes in codon 277 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003302
Reference: Escherichia coli K-12 MG1655 		Jan 2008
Gene Ontology
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003317
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003197 appB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003593 appB CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003597 appB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007303 appB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000993 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005500 appB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000918 appB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008470 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009651 cydB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006729 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077214 appB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008544 appB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0010311 appB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001012 appB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005537 appB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0005053 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008963 appB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007568 appB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005585 appB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006055 appB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009650 appB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009822 appB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006257 appB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006910 appB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008788 appB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008333 appB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007788 appB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025210 appB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007455 appB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005765 appB CDS
Automated Process Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003302 appB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000988 appB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001067 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002137 appB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131056 appB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0003448 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001050 appB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005517 cydB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001192 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005797 cydB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004059 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004020 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004660 cydB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006353 cydB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005293 cydB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005347 cydB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0008116 cydB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005430 cydB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006296 cydB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004488 cydB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001082 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001080 appB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001437 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006543 cydB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008640 cydB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0006019 cydB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007094 cydB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0108864 appB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0082797 appB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095833 appB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007535 cydB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006859 cydB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007407 cydB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002496 appB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007748 appB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004920 appB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001073 appB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072084 appB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087333 appB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001047 appB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0001058 appB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1087447 to 1098583
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000936hyaBCDSforward10864051088198Upstream
AEC-0000937hyaCCDSforward10882171088924Upstream
AEC-0000938hyaDCDSforward10889211089508Upstream
AEC-0000939hyaECDSforward10895051089903Upstream
AEC-0000940hyaFCDSforward10899001090757Upstream
AEC-0000941appCCDSforward10908911092435Upstream
AEC-0004435appBCDSforward10924471093583Matches
AEC-0000942appACDSforward10937681095066Downstream
AEC-0000943etkCDScomplement10951811097361Downstream
AEC-0000944etpCDScomplement10973811097827Downstream
AEC-0000945gfcECDScomplement10978151098954Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948