Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004450 (oppF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004450
Names
oppF ECDH10B_1309
Product
ATP-binding subunit of oligopeptide ABC transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1344806 1345810 1005 335
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Jul 2009
Automated Process Approved IPR010066 (IPR010066 (DEPRECATED) Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal) Jul 2009
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Jul 2009
Automated Process Approved IPR013563 (IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015197 (DEPRECATED) peptide transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Uncurated name oppF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004182
Reference: Escherichia coli K-12 MG1655 		Jan 2008
Person Approved locus tag ECDH10B_1309 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Uncurated product ATP-binding subunit of oligopeptide ABC transporter Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004182
Reference: Escherichia coli K-12 MG1655 		Jan 2008
Protein Family
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010066 (DEPRECATED) Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal Protein Sequence Similarity - InterPro Domain: IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013563
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Uncurated note contains the nonsynonymous change S325A Protein Sequence Similarity - ASAP FeatureID: ABE-0004182
Reference: Escherichia coli K-12 DH10B 		Jan 2008
Gene Ontology
Automated Process Approved GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015197 (DEPRECATED) peptide transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010066
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001230 oppF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001343 oppF CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020635 oppF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001648 oppF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003876 oppF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006114 oppF CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001306 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009845 oppF CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001193 oppF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008172 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005149 oppF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006834 oppF CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077825 oppF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008494 oppF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008618 oppF CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001460 oppF CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005837 oppF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001444 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010445 oppF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009480 oppF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010683 oppF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008903 oppF CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006573 oppF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009427 oppF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010365 oppF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010062 oppF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010602 oppF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009252 oppF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008051 oppF CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025807 oppF CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005907 oppF_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006032 oppF CDS
Automated Process Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004182 oppF CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001273 oppF CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001324 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001892 oppF CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131701 oppF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004324 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001449 oppF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062584 oppF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001335 oppF CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003886 oppF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000599 oppF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005579 oppF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001260 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0002026 oppF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005857 oppF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004244 oppF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004194 oppF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004719 oppF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006295 oppF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005236 oppF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005293 oppF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004751 oppF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005369 oppF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006235 oppF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004547 oppF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001136 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001135 oppF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001511 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006482 oppF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0008735 oppF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005960 oppF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007039 oppF CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107750 oppF CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083368 oppF CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095668 oppF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007597 oppF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005949 oppF CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008696 oppF CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0002021 oppF CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006820 oppF CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007008 oppF CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0001489 oppF CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072390 oppF CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087587 oppF CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001336 oppF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002125 oppF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002694 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006545 oppF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003511 oppF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002382 oppF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002983 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239038 oppF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006272 oppF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001864 oppF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004680 oppF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001265 oppF CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122478 oppF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005613 oppF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007736 oppF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002954 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007528 oppF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006042 oppF CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031736 oppF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005792 oppF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001989 oppF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001135 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007178 oppF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005927 oppF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002193 oppF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002585 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002444 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1339806 to 1350810
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000024IS1A.2repeat_regionforward13393241340091Upstream
AEC-0004449oppACDSforward13402241341855Upstream
AEC-0001167oppBCDSforward13419411342861Upstream
AEC-0001168oppCCDSforward13428761343784Upstream
AEC-0001169oppDCDSforward13437961344809Overlaps Upstream
AEC-0004450oppFCDSforward13448061345810Matches
AEC-0001170yciUCDScomplement13458631346192Downstream
AEC-0001171clsCDScomplement13462271347687Downstream
AEC-0004451kchCDScomplement13480581349311Downstream
AEC-0004563phi80lacZdelM15prophageforward13496131396987Downstream
AEC-0004456intCDSforward13497591351009Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948