Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0004455 (acnA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0004455
Names
acnA ECDH10B_1393
Product
aconitate hydratase 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1423251 1425926 2676 892
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006249 (IPR006249 Aconitase/Iron-responsive element-binding protein 2) Jul 2009
Automated Process Approved IPR015934 (IPR015934 (DEPRECATED) Aconitase/2-methylisocitrate dehydratase) Jul 2009
Automated Process Approved IPR015937 (IPR015937 (DEPRECATED) Aconitase/isopropylmalate dehydratase) Jul 2009
Automated Process Approved IPR015931 (IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3) Jul 2009
Automated Process Approved IPR015932 (IPR015932 Aconitase, domain 2) Jul 2009
Automated Process Approved IPR015928 (IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel) Jul 2009
Automated Process Approved IPR001030 (IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain) Jul 2009
Automated Process Approved IPR000573 (IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006249
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006249
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name acnA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004283
Reference: Escherichia coli K-12 MG1655 		Jan 2008
Person Approved locus tag ECDH10B_1393 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product aconitate hydratase 1 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0004283
Reference: Escherichia coli K-12 MG1655 		Jan 2008
Protein Family
Automated Process Approved protein family IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Protein Sequence Similarity - InterPro Domain: IPR015928
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015932 Aconitase, domain 2 Protein Sequence Similarity - InterPro Domain: IPR015932
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain Protein Sequence Similarity - InterPro Domain: IPR001030
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 Protein Sequence Similarity - InterPro Domain: IPR015931
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain Protein Sequence Similarity - InterPro Domain: IPR000573
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006249 Aconitase/Iron-responsive element-binding protein 2 Protein Sequence Similarity - InterPro Domain: IPR006249
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015937 (DEPRECATED) Aconitase/isopropylmalate dehydratase Protein Sequence Similarity - InterPro Domain: IPR015937
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015934 (DEPRECATED) Aconitase/2-methylisocitrate dehydratase Protein Sequence Similarity - InterPro Domain: IPR015934
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved note contains the nonsynonymous change S522G Protein Sequence Similarity - ASAP FeatureID: ABE-0004283
Reference: Escherichia coli K-12 DH10B 		Jan 2008
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006249
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006249
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001888 acnA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001651 acnA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020610 acnA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001676 acnA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003907 acnA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006146 acnA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001341 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0009876 acnA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001270 acnA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008138 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005192 acnA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006804 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077861 acnA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008463 acnA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0006088 acnA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001565 acnA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005918 acnA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009654 acnA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0006750 acnA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007726 acnA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011225 acnA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0011010 acnA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0026263 acnA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0005941 acnA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0006063 acnA CDS
Automated Process Uncurated Go view Escherichia coli K-12 MG1655 ABE-0004283 acnA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0001305 acnA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001355 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001852 acnA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0131813 acnA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002294 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001553 acnA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062202 acnA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001008 acnA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000504 acnA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002768 acnA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005613 acnA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001302 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001994 acnA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005890 acnA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004337 acnA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004284 acnA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004753 acnA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006261 acnA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005201 acnA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004717 acnA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005335 acnA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006201 acnA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004581 acnA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001166 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001164 acnA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001550 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006448 acnA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005165 acnA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005925 acnA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007004 acnA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107812 acnA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083339 acnA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095571 acnA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007631 acnA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005913 acnA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007887 acnA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008409 acnA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0072421 acnA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087618 acnA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001367 acnA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0002045 acnA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003152 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005756 acn CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003670 acn CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002721 acnA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002368 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239092 acnA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006343 acnA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001908 acnA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004719 acnA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001231 acnA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122593 acnA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007137 acnA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007699 acnA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001123 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007491 acnA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006004 acnA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031770 acnA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005754 acnA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002033 acnA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001091 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007144 acnA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005891 acnA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002227 acnA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002627 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002402 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1418251 to 1430926
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004454topACDSforward14184681421065Upstream
AEC-0001194cysBCDSforward14212751422249Upstream
AEC-0004064ymiACDSforward14225801422708Upstream
AEC-0004065yciXCDSforward14227111422878Upstream
AEC-0004455acnACDSforward14232511425926Matches
AEC-0001195ribACDScomplement14259901426580Downstream
AEC-0001196pgpBCDSforward14267501427514Downstream
AEC-0001197yciSCDSforward14276631427971Downstream
AEC-0001198yciMCDSforward14279781429147Downstream
AEC-0001199pyrFCDSforward14293411430078Downstream
AEC-0001200yciHCDSforward14300781430404Downstream
AEC-0001201osmBCDScomplement14305301430748Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948