• DM
• Doob-Gillespie method
• Gillespie's algorithm
• Gillespie's direct method
• SSA
• stochastic simulation algorithm

dk

2007-11-10

Stochastic simulation algorithm using the reaction probability density function (next-reaction density function), giving the probability that the next reaction will happen in a given time interval. To choose the next reaction to fire, the algorithm directly and separately calculates the identity of the reaction and the time it will fire.

• BetaWB
• ByoDyn
• Cain

• http://identifiers.org/doi/10.1016/0021-9991(76)90041-3
• http://identifiers.org/doi/10.1021/j100540a008

• Gillespie first reaction algorithm
• accelerated stochastic simulation algorithm
• generalized stochastic simulation algorithm
• hierarchical stochastic simulation algorithm

• Gillespie-like method
• nothas characteristicsomespatial description
• has characteristicsomeexact solution
• is similar tosomeBortz-Kalos-Lebowitz algorithm