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Report for CCDS10121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10121.1 Public Homo sapiens 15 SLC28A2 24 110 108 CCDS HistoryNCBI Gene:9153Re-query CCDS DB by CCDS ID:10121.1Re-query CCDS DB by GeneID:9153See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10121.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347644.8 ENSP00000315006.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000347644.8Link to Ensembl Protein Viewer:ENSP00000315006.4Re-query CCDS DB by Nucleotide ID:ENST00000347644Re-query CCDS DB by Protein ID:ENSP00000315006
Original member Current member NCBI NM_004212.4 NP_004203.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004212.4Link to Protein Sequence:NP_004203.2Re-query CCDS DB by Nucleotide ID:NM_004212Re-query CCDS DB by Protein ID:NP_004203Link to BLAST:NP_004203.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004203.2 658 O43868 658 100% 0 0

Chromosomal Locations for CCDS 10121.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 45253216 45253296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45253432 45253520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45262015 45262106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45263061 45263244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45263881 45264022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45264655 45264768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45265089 45265166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45265583 45265663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45266081 45266161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45267455 45267580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45267666 45267796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45268210 45268378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45269338 45269535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45270195 45270276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45272295 45272393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45272673 45272784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 45275396 45275513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1977 nt):
ATGGAGAAAGCAAGTGGAAGACAGTCCATTGCTCTGTCCACAGTGGAGACTGGCACAGTGAACCCGGGGC
TGGAGCTCATGGAAAAAGAAGTAGAGCCTGAGGGAAGCAAGAGGACTGACGCACAAGGACACAGCCTGGG
GGATGGACTGGGCCCTTCCACTTACCAGAGGAGGAGTCGGTGGCCTTTCAGCAAAGCAAGAAGTTTCTGC
AAAACACACGCCAGCTTGTTCAAGAAGATCCTGTTGGGCCTGTTGTGTTTGGCCTATGCTGCCTATCTCC
TGGCAGCTTGCATCTTGAATTTCCAGAGGGCACTGGCCTTGTTTGTCATCACCTGCTTGGTGATCTTTGT
CCTGGTTCACTCGTTTTTGAAAAAGCTCCTGGGCAAAAAATTAACAAGATGTCTGAAGCCCTTTGAAAAC
TCCCGCCTGAGGCTTTGGACGAAATGGGTGTTTGCAGGAGTCTCCTTGGTTGGCCTTATACTGTGGTTGG
CTTTAGACACAGCCCAAAGGCCAGAGCAGCTGATCCCCTTTGCAGGAATCTGCATGTTCATCCTTATCCT
CTTTGCCTGCTCCAAACACCACAGCGCAGTGTCCTGGAGGACAGTGTTTTCGGGCCTAGGTCTTCAATTT
GTCTTTGGGATCTTGGTCATCAGAACTGATCTTGGATATACTGTATTTCAGTGGCTGGGAGAGCAGGTCC
AGATTTTCCTGAACTACACTGTGGCCGGCTCCAGTTTTGTCTTTGGGGATACACTGGTCAAGGATGTCTT
TGCTTTTCAGGCCTTACCAATCATCATTTTCTTTGGATGTGTGGTGTCCATTCTCTACTACCTGGGCCTT
GTGCAATGGGTAGTTCAGAAGGTCGCCTGGTTTTTACAAATCACTATGGGCACCACTGCTACAGAGACCC
TGGCTGTGGCAGGAAACATCTTTGTGGGTATGACAGAGGCACCTCTGCTCATCCGTCCCTACCTTGGGGA
CATGACACTCTCTGAAATCCATGCGGTGATGACTGGAGGGTTTGCCACCATTTCTGGCACTGTGCTGGGA
GCCTTCATAGCCTTTGGGGTTGATGCATCATCCCTGATTTCTGCCTCTGTGATGGCCGCCCCTTGTGCTC
TCGCCTCATCAAAGCTAGCGTATCCGGAAGTGGAGGAGTCCAAGTTCAAGAGTGAGGAGGGGGTAAAGCT
GCCCCGTGGGAAGGAGAGGAATGTCCTGGAAGCTGCCAGCAACGGAGCCGTAGATGCCATAGGCCTTGCT
ACTAATGTAGCAGCCAACCTGATTGCCTTTTTGGCTGTGTTGGCCTTCATCAATGCTGCCCTCTCCTGGC
TGGGGGAATTGGTGGACATACAGGGGCTCACTTTCCAGGTCATCTGCTCCTATCTCCTAAGGCCCATGGT
TTTCATGATGGGTGTAGAGTGGACAGACTGTCCAATGGTGGCTGAGATGGTGGGAATCAAGTTCTTCATA
AATGAGTTTGTGGCTTATCAGCAACTGTCTCAATACAAGAACAAACGTCTCTCTGGAATGGAGGAGTGGA
TTGAGGGAGAGAAACAGTGGATTTCTGTGAGAGCTGAAATCATTACAACATTTTCACTCTGTGGATTTGC
CAATCTTAGTTCCATAGGAATCACACTTGGAGGCTTGACATCAATAGTACCTCACCGGAAGAGTGACTTG
TCCAAGGTTGTGGTCAGGGCCCTCTTCACAGGGGCCTGTGTATCCCTTATCAGTGCCTGTATGGCAGGAA
TCCTCTATGTCCCCAGGGGAGCTGAAGCTGACTGTGTCTCCTTCCCAAACACAAGTTTCACCAATAGAAC
CTATGAGACCTACATGTGCTGCAGAGGGCTCTTTCAGAGTACTTCTCTGAATGGCACCAACCCTCCTTCT
TTTTCTGGTCCCTGGGAAGATAAGGAGTTCAGTGCTATGGCCCTTACTAACTGCTGTGGATTCTACAACA
ATACCGTCTGTGCCTAA

Translation (658 aa):
MEKASGRQSIALSTVETGTVNPGLELMEKEVEPEGSKRTDAQGHSLGDGLGPSTYQRRSRWPFSKARSFC
KTHASLFKKILLGLLCLAYAAYLLAACILNFQRALALFVITCLVIFVLVHSFLKKLLGKKLTRCLKPFEN
SRLRLWTKWVFAGVSLVGLILWLALDTAQRPEQLIPFAGICMFILILFACSKHHSAVSWRTVFSGLGLQF
VFGILVIRTDLGYTVFQWLGEQVQIFLNYTVAGSSFVFGDTLVKDVFAFQALPIIIFFGCVVSILYYLGL
VQWVVQKVAWFLQITMGTTATETLAVAGNIFVGMTEAPLLIRPYLGDMTLSEIHAVMTGGFATISGTVLG
AFIAFGVDASSLISASVMAAPCALASSKLAYPEVEESKFKSEEGVKLPRGKERNVLEAASNGAVDAIGLA
TNVAANLIAFLAVLAFINAALSWLGELVDIQGLTFQVICSYLLRPMVFMMGVEWTDCPMVAEMVGIKFFI
NEFVAYQQLSQYKNKRLSGMEEWIEGEKQWISVRAEIITTFSLCGFANLSSIGITLGGLTSIVPHRKSDL
SKVVVRALFTGACVSLISACMAGILYVPRGAEADCVSFPNTSFTNRTYETYMCCRGLFQSTSLNGTNPPS
FSGPWEDKEFSAMALTNCCGFYNNTVCA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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