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Report for CCDS10334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10334.1 Public Homo sapiens 15 SLC28A1 24 110 108 CCDS HistoryNCBI Gene:9154Re-query CCDS DB by CCDS ID:10334.1Re-query CCDS DB by GeneID:9154See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10334.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000286749.3 ENSP00000286749.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000286749.3Link to Ensembl Protein Viewer:ENSP00000286749.3Re-query CCDS DB by Nucleotide ID:ENST00000286749Re-query CCDS DB by Protein ID:ENSP00000286749
Original member Current member EBI ENST00000394573.6 ENSP00000378074.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394573.6Link to Ensembl Protein Viewer:ENSP00000378074.1Re-query CCDS DB by Nucleotide ID:ENST00000394573Re-query CCDS DB by Protein ID:ENSP00000378074
Original member Current member NCBI NM_001287762.2 NP_001274691.1 Accepted alive Link to Nucleotide Sequence:NM_001287762.2Link to Protein Sequence:NP_001274691.1Re-query CCDS DB by Nucleotide ID:NM_001287762Re-query CCDS DB by Protein ID:NP_001274691Link to BLAST:NP_001274691.1
Original member Current member NCBI NM_004213.5 NP_004204.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004213.5Link to Protein Sequence:NP_004204.3Re-query CCDS DB by Nucleotide ID:NM_004213Re-query CCDS DB by Protein ID:NP_004204Link to BLAST:NP_004204.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274691.1 649 O00337-1 649 100% 0 0
NP_004204.3 649 O00337-1 649 100% 0 0

Chromosomal Locations for CCDS 10334.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 84887761 84887856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84888772 84888860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84890443 84890534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84894940 84895123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84904097 84904238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84905539 84905652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84908718 84908795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84918524 84918604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84920989 84921069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84923985 84924110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84933145 84933275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84935026 84935194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84935321 84935518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84943445 84943526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84944566 84944664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84944756 84944867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84945125 84945200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1950 nt):
ATGGAGAACGACCCCTCGAGACGAAGAGAGTCCATCTCTCTCACACCTGTGGCCAAGGGTCTGGAGAACA
TGGGGGCTGATTTCTTGGAAAGCCTGGAGGAAGGCCAGCTCCCTAGGAGTGACTTGAGCCCCGCAGAGAT
CAGGAGCAGCTGGAGCGAGGCGGCGCCGAAGCCCTTCTCCAGATGGAGGAACCTGCAGCCAGCCCTGAGA
GCCAGAAGCTTCTGCAGGGAGCACATGCAGCTGTTTCGATGGATCGGCACAGGCCTGCTCTGCACTGGGC
TCTCTGCCTTCCTGCTGGTGGCCTGCCTCCTGGATTTCCAGAGGGCCCTGGCTCTGTTTGTCCTCACCTG
TGTGGTCCTCACCTTCCTGGGCCACCGCCTGCTGAAACGGCTTCTGGGGCCAAAGCTGAGGAGGTTTCTC
AAGCCTCAGGGCCATCCCCGCCTGCTGCTCTGGTTTAAGAGGGGTCTAGCTCTTGCTGCTTTCCTGGGCC
TGGTCCTGTGGCTGTCTCTGGACACCTCCCAGCGGCCTGAGCAACTGGTGTCCTTCGCAGGAATCTGCGT
GTTCGTCGCTCTCCTCTTTGCCTGCTCAAAGCATCATTGCGCAGTGTCCTGGAGGGCCGTGTCTTGGGGA
CTTGGACTGCAGTTTGTACTTGGACTCCTCGTCATCAGAACAGAACCAGGATTCATTGCGTTCGAGTGGC
TGGGCGAGCAGATCCGGATCTTCCTGAGCTACACGAAGGCTGGCTCCAGCTTCGTGTTTGGGGAGGCGCT
GGTCAAGGATGTCTTTGCCTTTCAGGTTCTGCCCATCATTGTCTTTTTCAGCTGTGTCATATCCGTTCTC
TACCACGTGGGCCTCATGCAGTGGGTGATCCTGAAGATTGCCTGGCTGATGCAAGTCACCATGGGCACCA
CAGCCACTGAGACCCTGAGTGTGGCTGGAAACATCTTTGTGAGCCAGACCGAGGCTCCATTACTGATCCG
GCCCTACTTGGCAGACATGACACTCTCTGAAGTCCACGTTGTCATGACCGGAGGTTACGCCACCATTGCT
GGCAGCCTGCTGGGTGCCTACATCTCCTTTGGGATCGATGCCACCTCGTTGATTGCAGCCTCTGTGATGG
CTGCCCCTTGTGCCTTGGCCCTCTCCAAGCTGGTCTACCCGGAGGTGGAGGAGTCCAAGTTTAGGAGGGA
GGAAGGAGTGAAACTGACCTATGGAGATGCTCAGAACCTCATAGAAGCAGCCAGCACTGGGGCCGCCATC
TCCGTGAAGGTGGTCGCCAACATCGCTGCCAACCTGATTGCGTTCCTGGCTGTGCTGGACTTTATCAATG
CTGCCCTCTCCTGGCTGGGAGACATGGTGGACATCCAAGGGCTCAGCTTCCAGCTCATCTGCTCCTACAT
CCTGCGGCCTGTAGCCTTCTTGATGGGTGTGGCGTGGGAGGACTGCCCAGTGGTAGCTGAGCTGCTGGGG
ATCAAGCTGTTTCTGAACGAGTTTGTGGCCTATCAAGACCTCTCCAAGTACAAGCAACGCCGCCTGGCAG
GGGCCGAGGAGTGGGTCGGCGACAGGAAGCAGTGGATCTCCGTCAGAGCTGAAGTCCTCACGACGTTTGC
CCTCTGTGGATTTGCCAATTTCAGCTCCATTGGGATCATGCTGGGAGGCTTGACCTCCATGGTCCCCCAA
CGGAAGAGCGACTTCTCCCAGATAGTGCTCCGGGCGCTCTTCACGGGAGCCTGTGTGTCCCTGGTGAACG
CCTGTATGGCAGGGATCCTCTACATGCCCAGGGGGGCTGAAGTTGACTGCATGTCCCTCTTGAACACGAC
CCTCAGCAGCAGTAGCTTTGAGATTTACCAGTGCTGCCGTGAGGCCTTCCAGAGCGTCAATCCAGAGTTC
AGCCCAGAGGCCCTGGACAACTGCTGTCGGTTTTACAACCACACGATCTGTGCACAGTGA

Translation (649 aa):
MENDPSRRRESISLTPVAKGLENMGADFLESLEEGQLPRSDLSPAEIRSSWSEAAPKPFSRWRNLQPALR
ARSFCREHMQLFRWIGTGLLCTGLSAFLLVACLLDFQRALALFVLTCVVLTFLGHRLLKRLLGPKLRRFL
KPQGHPRLLLWFKRGLALAAFLGLVLWLSLDTSQRPEQLVSFAGICVFVALLFACSKHHCAVSWRAVSWG
LGLQFVLGLLVIRTEPGFIAFEWLGEQIRIFLSYTKAGSSFVFGEALVKDVFAFQVLPIIVFFSCVISVL
YHVGLMQWVILKIAWLMQVTMGTTATETLSVAGNIFVSQTEAPLLIRPYLADMTLSEVHVVMTGGYATIA
GSLLGAYISFGIDATSLIAASVMAAPCALALSKLVYPEVEESKFRREEGVKLTYGDAQNLIEAASTGAAI
SVKVVANIAANLIAFLAVLDFINAALSWLGDMVDIQGLSFQLICSYILRPVAFLMGVAWEDCPVVAELLG
IKLFLNEFVAYQDLSKYKQRRLAGAEEWVGDRKQWISVRAEVLTTFALCGFANFSSIGIMLGGLTSMVPQ
RKSDFSQIVLRALFTGACVSLVNACMAGILYMPRGAEVDCMSLLNTTLSSSSFEIYQCCREAFQSVNPEF
SPEALDNCCRFYNHTICAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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