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Report for CCDS10371.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10371.1 Public Homo sapiens 15 SLCO3A1 24 110 108 CCDS HistoryNCBI Gene:28232Re-query CCDS DB by CCDS ID:10371.1Re-query CCDS DB by GeneID:28232See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10371.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318445.11 ENSP00000320634.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000318445.11Link to Ensembl Protein Viewer:ENSP00000320634.6Re-query CCDS DB by Nucleotide ID:ENST00000318445Re-query CCDS DB by Protein ID:ENSP00000320634
Original member Current member NCBI NM_013272.4 NP_037404.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013272.4Link to Protein Sequence:NP_037404.2Re-query CCDS DB by Nucleotide ID:NM_013272Re-query CCDS DB by Protein ID:NP_037404Link to BLAST:NP_037404.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037404.2 710 Q9UIG8-1 710 100% 0 0

Chromosomal Locations for CCDS 10371.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 91853909 91854088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 91915993 91916458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92094881 92094979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92104279 92104542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92120465 92120629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92126061 92126259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92128351 92128489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92146984 92147159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92150950 92151014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92162756 92163135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGCAGGGGAAGAAGCCGGGCGGTTCGTCGGGCGGCGGCCGGAGCGGCGAGCTGCAGGGGGACGAGGCGC
AGAGGAACAAGAAAAAGAAAAAGAAGGTGTCCTGCTTTTCCAACATCAAGATCTTCCTGGTGTCCGAGTG
CGCCCTGATGCTGGCGCAGGGCACGGTGGGCGCCTACCTGGTGAGCGTCCTGACCACCCTGGAGCGTAGG
TTCAACCTGCAGAGCGCTGACGTGGGTGTGATCGCTAGCAGCTTCGAGATCGGGAACCTGGCGCTCATCC
TCTTCGTGAGCTACTTCGGGGCACGCGGGCACCGGCCGCGCCTGATCGGCTGCGGCGGCATCGTCATGGC
GCTGGGCGCGCTGCTGTCGGCGCTGCCCGAGTTCCTGACCCACCAGTACAAGTACGAGGCGGGCGAGATC
CGCTGGGGCGCCGAGGGCCGCGACGTCTGCGCAGCCAACGGCTCGGGCGGCGACGAGGGGCCCGACCCCG
ACCTCATCTGCCGCAACCGGACGGCTACCAACATGATGTACTTGCTGCTCATTGGGGCCCAGGTGCTCCT
GGGCATCGGTGCTACCCCTGTGCAGCCCCTGGGCGTCTCCTACATCGACGACCACGTGCGGAGGAAGGAC
TCCTCGCTCTATATAGGAATCCTGTTCACGATGCTGGTATTTGGACCAGCCTGCGGGTTTATCCTGGGCT
CTTTCTGTACCAAAATCTACGTGGATGCGGTCTTCATTGACACAAGTAACCTGGACATCACTCCGGACGA
CCCCCGCTGGATCGGAGCCTGGTGGGGTGGCTTTCTGCTCTGCGGTGCCTTACTCTTCTTCTCTTCCCTC
TTGATGTTTGGGTTTCCACAGTCCCTGCCCCCGCACTCAGAGCCCGCCATGGAAAGCGAGCAGGCCATGC
TCTCCGAAAGAGAATACGAGAGACCCAAGCCCAGCAACGGGGTCCTGAGGCACCCCCTGGAGCCAGACAG
CAGTGCCTCCTGTTTCCAGCAGCTGAGAGTGATCCCGAAGGTCACCAAGCACCTGCTCTCAAACCCTGTG
TTCACCTGCATCATCCTGGCCGCCTGCATGGAGATTGCAGTGGTGGCTGGCTTCGCTGCCTTTTTGGGGA
AGTACCTGGAGCAGCAGTTTAACCTCACCACCTCTTCTGCCAACCAGCTGCTTGGGATGACTGCGATCCC
GTGTGCTTGTCTGGGTATCTTCCTGGGAGGTCTTTTGGTGAAGAAGCTCAGCCTGTCTGCCCTGGGGGCC
ATTCGGATGGCCATGCTCGTCAACCTGGTGTCCACTGCTTGCTACGTCTCCTTCCTCTTCCTGGGCTGCG
ACACTGGCCCTGTGGCTGGGGTTACTGTTCCCTATGGAAACAGCACAGCACCTGGCTCAGCCCTGGACCC
CTACTCGCCCTGCAATAATAACTGTGAATGCCAAACCGATTCCTTCACTCCAGTGTGTGGGGCAGATGGC
ATCACCTACCTGTCTGCCTGCTTTGCTGGCTGCAACAGCACGAATCTCACGGGCTGTGCGTGCCTCACCA
CCGTCCCTGCTGAGAACGCAACCGTGGTTCCTGGAAAATGCCCCAGTCCTGGGTGCCAAGAGGCCTTCCT
CACTTTCCTCTGTGTGATGTGTATCTGCAGCCTGATCGGTGCCATGGCACAGACACCCTCAGTCATCATC
CTCATCAGGACAGTCAGCCCTGAACTCAAGTCTTACGCTTTGGGAGTTCTTTTTCTCCTCCTTCGTTTGT
TGGGCTTCATCCCTCCACCCCTCATCTTCGGGGCTGGCATCGACTCCACCTGCCTGTTCTGGAGCACGTT
CTGTGGGGAGCAAGGCGCCTGCGTCCTCTACGACAATGTGGTCTACCGATACCTGTATGTCAGCATCGCC
ATCGCGCTCAAATCCTTCGCCTTCATCCTGTACACCACCACGTGGCAGTGCCTGAGGAAAAACTATAAAC
GCTACATCAAAAACCACGAGGGCGGGCTGAGCACCAGTGAGTTCTTTGCCTCTACTCTGACCCTAGACAA
CCTGGGGAGGGACCCTGTGCCCGCAAACCAGACACATAGGACAAAGTTTATCTATAACCTGGAAGACCAT
GAGTGGTGTGAAAACATGGAGTCCGTTTTATAG

Translation (710 aa):
MQGKKPGGSSGGGRSGELQGDEAQRNKKKKKKVSCFSNIKIFLVSECALMLAQGTVGAYLVSVLTTLERR
FNLQSADVGVIASSFEIGNLALILFVSYFGARGHRPRLIGCGGIVMALGALLSALPEFLTHQYKYEAGEI
RWGAEGRDVCAANGSGGDEGPDPDLICRNRTATNMMYLLLIGAQVLLGIGATPVQPLGVSYIDDHVRRKD
SSLYIGILFTMLVFGPACGFILGSFCTKIYVDAVFIDTSNLDITPDDPRWIGAWWGGFLLCGALLFFSSL
LMFGFPQSLPPHSEPAMESEQAMLSEREYERPKPSNGVLRHPLEPDSSASCFQQLRVIPKVTKHLLSNPV
FTCIILAACMEIAVVAGFAAFLGKYLEQQFNLTTSSANQLLGMTAIPCACLGIFLGGLLVKKLSLSALGA
IRMAMLVNLVSTACYVSFLFLGCDTGPVAGVTVPYGNSTAPGSALDPYSPCNNNCECQTDSFTPVCGADG
ITYLSACFAGCNSTNLTGCACLTTVPAENATVVPGKCPSPGCQEAFLTFLCVMCICSLIGAMAQTPSVII
LIRTVSPELKSYALGVLFLLLRLLGFIPPPLIFGAGIDSTCLFWSTFCGEQGACVLYDNVVYRYLYVSIA
IALKSFAFILYTTTWQCLRKNYKRYIKNHEGGLSTSEFFASTLTLDNLGRDPVPANQTHRTKFIYNLEDH
EWCENMESVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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