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Report for CCDS10606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10606.1 Public Homo sapiens 16 HS3ST2 24 110 108 CCDS HistoryNCBI Gene:9956Re-query CCDS DB by CCDS ID:10606.1Re-query CCDS DB by GeneID:9956See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10606.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261374.4 ENSP00000261374.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261374.4Link to Ensembl Protein Viewer:ENSP00000261374.3Re-query CCDS DB by Nucleotide ID:ENST00000261374Re-query CCDS DB by Protein ID:ENSP00000261374
Original member Current member NCBI NM_006043.2 NP_006034.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006043.2Link to Protein Sequence:NP_006034.1Re-query CCDS DB by Nucleotide ID:NM_006043Re-query CCDS DB by Protein ID:NP_006034Link to BLAST:NP_006034.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006034.1 367 Q9Y278 367 100% 0 0

Chromosomal Locations for CCDS 10606.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 22814611 22815095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22914944 22915562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGGCCTATAGGGTCCTGGGCCGCGCGGGGCCACCTCAGCCGCGGAGGGCGCGCAGGCTGCTCTTCGCCT
TCACGCTCTCGCTCTCCTGCACTTACCTGTGTTACAGCTTCCTGTGCTGCTGCGACGACCTGGGTCGGAG
CCGCCTCCTCGGCGCGCCTCGCTGCCTCCGCGGCCCCAGCGCGGGCGGCCAGAAACTTCTCCAGAAGTCC
CGCCCCTGTGATCCCTCCGGGCCGACGCCCAGCGAGCCCAGCGCTCCCAGCGCGCCCGCCGCCGCCGTGC
CCGCCCCTCGCCTCTCCGGTTCCAACCACTCCGGCTCACCCAAGCTGGGTACCAAGCGGTTGCCCCAAGC
CCTCATTGTGGGCGTGAAGAAGGGGGGCACCCGGGCCGTGCTGGAGTTTATCCGAGTACACCCGGACGTG
CGGGCCTTGGGCACGGAACCCCACTTCTTTGACAGGAACTACGGCCGCGGGCTGGATTGGTACAGGAGCC
TGATGCCCAGGACCCTCGAGAGCCAGATCACGCTGGAGAAGACGCCCAGCTACTTTGTCACTCAAGAGGC
TCCTCGACGCATCTTCAACATGTCCCGAGACACCAAGCTGATCGTGGTTGTGCGGAACCCTGTGACCCGT
GCCATCTCTGATTACACGCAGACACTCTCCAAGAAGCCCGACATCCCGACCTTTGAGGGCCTCTCCTTCC
GCAACCGCACCCTGGGCCTGGTGGACGTGTCATGGAACGCCATCCGCATCGGCATGTACGTGCTGCACCT
GGAGAGCTGGCTGCAGTACTTCCCGCTAGCTCAGATTCACTTCGTCAGTGGCGAGCGACTCATCACTGAC
CCGGCCGGCGAGATGGGGCGAGTCCAGGACTTCCTGGGCATTAAGAGATTCATCACGGACAAGCACTTCT
ATTTCAACAAGACCAAAGGATTCCCTTGCTTGAAAAAAACAGAATCGAGCCTCCTGCCTCGATGCTTGGG
CAAATCAAAAGGGAGAACTCATGTACAGATTGATCCTGAAGTGATAGACCAGCTCCGAGAATTTTATAGA
CCGTATAATATCAAATTTTATGAAACCGTTGGGCAGGACTTCAGGTGGGAATAA

Translation (367 aa):
MAYRVLGRAGPPQPRRARRLLFAFTLSLSCTYLCYSFLCCCDDLGRSRLLGAPRCLRGPSAGGQKLLQKS
RPCDPSGPTPSEPSAPSAPAAAVPAPRLSGSNHSGSPKLGTKRLPQALIVGVKKGGTRAVLEFIRVHPDV
RALGTEPHFFDRNYGRGLDWYRSLMPRTLESQITLEKTPSYFVTQEAPRRIFNMSRDTKLIVVVRNPVTR
AISDYTQTLSKKPDIPTFEGLSFRNRTLGLVDVSWNAIRIGMYVLHLESWLQYFPLAQIHFVSGERLITD
PAGEMGRVQDFLGIKRFITDKHFYFNKTKGFPCLKKTESSLLPRCLGKSKGRTHVQIDPEVIDQLREFYR
PYNIKFYETVGQDFRWE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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