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Report for CCDS10871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10871.1 Public Homo sapiens 16 HAS3 24 110 108 CCDS HistoryNCBI Gene:3038Re-query CCDS DB by CCDS ID:10871.1Re-query CCDS DB by GeneID:3038See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10871.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306560.1 ENSP00000304440.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000306560.1Link to Ensembl Protein Viewer:ENSP00000304440.1Re-query CCDS DB by Nucleotide ID:ENST00000306560Re-query CCDS DB by Protein ID:ENSP00000304440
Original member Current member EBI ENST00000569188.6 ENSP00000454731.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000569188.6Link to Ensembl Protein Viewer:ENSP00000454731.1Re-query CCDS DB by Nucleotide ID:ENST00000569188Re-query CCDS DB by Protein ID:ENSP00000454731
Original member Current member NCBI NM_001199280.2 NP_001186209.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001199280.2Link to Protein Sequence:NP_001186209.1Re-query CCDS DB by Nucleotide ID:NM_001199280Re-query CCDS DB by Protein ID:NP_001186209Link to BLAST:NP_001186209.1
Original member Current member NCBI NM_005329.3 NP_005320.2 Accepted alive Link to Nucleotide Sequence:NM_005329.3Link to Protein Sequence:NP_005320.2Re-query CCDS DB by Nucleotide ID:NM_005329Re-query CCDS DB by Protein ID:NP_005320Link to BLAST:NP_005320.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186209.1 553 O00219-1 553 100% 0 0
NP_005320.2 553 O00219-1 553 100% 0 0

Chromosomal Locations for CCDS 10871.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 69109396 69110031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69113441 69113542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 69114343 69115266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGCCGGTGCAGCTGACGACAGCCCTGCGTGTGGTGGGCACCAGCCTGTTTGCCCTGGCAGTGCTGGGTG
GCATCCTGGCAGCCTATGTGACGGGCTACCAGTTCATCCACACGGAAAAGCACTACCTGTCCTTCGGCCT
GTACGGCGCCATCCTGGGCCTGCACCTGCTCATTCAGAGCCTTTTTGCCTTCCTGGAGCACCGGCGCATG
CGACGTGCCGGCCAGGCCCTGAAGCTGCCCTCCCCGCGGCGGGGCTCGGTGGCACTGTGCATTGCCGCAT
ACCAGGAGGACCCTGACTACTTGCGCAAGTGCCTGCGCTCGGCCCAGCGCATCTCCTTCCCTGACCTCAA
GGTGGTCATGGTGGTGGATGGCAACCGCCAGGAGGACGCCTACATGCTGGACATCTTCCACGAGGTGCTG
GGCGGCACCGAGCAGGCCGGCTTCTTTGTGTGGCGCAGCAACTTCCATGAGGCAGGCGAGGGTGAGACGG
AGGCCAGCCTGCAGGAGGGCATGGACCGTGTGCGGGATGTGGTGCGGGCCAGCACCTTCTCGTGCATCAT
GCAGAAGTGGGGAGGCAAGCGCGAGGTCATGTACACGGCCTTCAAGGCCCTCGGCGATTCGGTGGACTAC
ATCCAGGTGTGCGACTCTGACACTGTGCTGGATCCAGCCTGCACCATCGAGATGCTTCGAGTCCTGGAGG
AGGATCCCCAAGTAGGGGGAGTCGGGGGAGATGTCCAGATCCTCAACAAGTACGACTCATGGATTTCCTT
CCTGAGCAGCGTGCGGTACTGGATGGCCTTCAACGTGGAGCGGGCCTGCCAGTCCTACTTTGGCTGTGTG
CAGTGTATTAGTGGGCCCTTGGGCATGTACCGCAACAGCCTCCTCCAGCAGTTCCTGGAGGACTGGTACC
ATCAGAAGTTCCTAGGCAGCAAGTGCAGCTTCGGGGATGACCGGCACCTCACCAACCGAGTCCTGAGCCT
TGGCTACCGAACTAAGTATACCGCGCGCTCCAAGTGCCTCACAGAGACCCCCACTAAGTACCTCCGGTGG
CTCAACCAGCAAACCCGCTGGAGCAAGTCTTACTTCCGGGAGTGGCTCTACAACTCTCTGTGGTTCCATA
AGCACCACCTCTGGATGACCTACGAGTCAGTGGTCACGGGTTTCTTCCCCTTCTTCCTCATTGCCACGGT
TATACAGCTTTTCTACCGGGGCCGCATCTGGAACATTCTCCTCTTCCTGCTGACGGTGCAGCTGGTGGGC
ATTATCAAGGCCACCTACGCCTGCTTCCTTCGGGGCAATGCAGAGATGATCTTCATGTCCCTCTACTCCC
TCCTCTATATGTCCAGCCTTCTGCCGGCCAAGATCTTTGCCATTGCTACCATCAACAAATCTGGCTGGGG
CACCTCTGGCCGAAAAACCATTGTGGTGAACTTCATTGGCCTCATTCCTGTGTCCATCTGGGTGGCAGTT
CTCCTGGGAGGGCTGGCCTACACAGCTTATTGCCAGGACCTGTTCAGTGAGACAGAGCTAGCCTTCCTTG
TCTCTGGGGCTATACTGTATGGCTGCTACTGGGTGGCCCTCCTCATGCTATATCTGGCCATCATCGCCCG
GCGATGTGGGAAGAAGCCGGAGCAGTACAGCTTGGCTTTTGCTGAGGTGTGA

Translation (553 aa):
MPVQLTTALRVVGTSLFALAVLGGILAAYVTGYQFIHTEKHYLSFGLYGAILGLHLLIQSLFAFLEHRRM
RRAGQALKLPSPRRGSVALCIAAYQEDPDYLRKCLRSAQRISFPDLKVVMVVDGNRQEDAYMLDIFHEVL
GGTEQAGFFVWRSNFHEAGEGETEASLQEGMDRVRDVVRASTFSCIMQKWGGKREVMYTAFKALGDSVDY
IQVCDSDTVLDPACTIEMLRVLEEDPQVGGVGGDVQILNKYDSWISFLSSVRYWMAFNVERACQSYFGCV
QCISGPLGMYRNSLLQQFLEDWYHQKFLGSKCSFGDDRHLTNRVLSLGYRTKYTARSKCLTETPTKYLRW
LNQQTRWSKSYFREWLYNSLWFHKHHLWMTYESVVTGFFPFFLIATVIQLFYRGRIWNILLFLLTVQLVG
IIKATYACFLRGNAEMIFMSLYSLLYMSSLLPAKIFAIATINKSGWGTSGRKTIVVNFIGLIPVSIWVAV
LLGGLAYTAYCQDLFSETELAFLVSGAILYGCYWVALLMLYLAIIARRCGKKPEQYSLAFAEV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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