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Report for CCDS10934.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10934.1 Public Homo sapiens 16 BCO1 24 110 108 CCDS HistoryNCBI Gene:53630Re-query CCDS DB by CCDS ID:10934.1Re-query CCDS DB by GeneID:53630See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10934.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258168.7 ENSP00000258168.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258168.7Link to Ensembl Protein Viewer:ENSP00000258168.2Re-query CCDS DB by Nucleotide ID:ENST00000258168Re-query CCDS DB by Protein ID:ENSP00000258168
Original member Current member NCBI NM_017429.3 NP_059125.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017429.3Link to Protein Sequence:NP_059125.2Re-query CCDS DB by Nucleotide ID:NM_017429Re-query CCDS DB by Protein ID:NP_059125Link to BLAST:NP_059125.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059125.2 547 Q9HAY6 547 100% 0 0

Chromosomal Locations for CCDS 10934.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 81238909 81238972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81245475 81245603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81259676 81259805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81262136 81262283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81264640 81264787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81267908 81268131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81270159 81270416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81280857 81280962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81285540 81285634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81287295 81287406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81290348 81290577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1644 nt):
ATGGATATAATATTTGGCAGGAATAGGAAAGAACAGCTGGAGCCTGTGAGGGCCAAAGTGACAGGCAAGA
TT
CCAGCATGGCTGCAGGGAACCCTGCTCCGCAATGGGCCTGGGATGCACACAGTTGGGGAGTCCAGATA
C
AACCATTGGTTCGACGGCCTTGCCCTGCTCCACAGCTTCACCATCAGAGACGGTGAAGTCTATTACAGG
AGC
AAATACCTGAGAAGCGATACCTACAACACCAATATTGAGGCAAACAGGATTGTGGTGTCTGAGTTTG
GA
ACAATGGCCTATCCGGACCCCTGCAAAAACATATTTTCCAAAGCTTTCTCCTACTTGTCTCACACCAT
C
CCCGATTTCACCGACAACTGCCTGATCAACATCATGAAGTGCGGAGAAGACTTCTACGCGACCTCAGAG
ACC
AATTACATCAGGAAAATCAACCCACAGACTCTGGAAACCCTGGAGAAGGTTGATTATCGTAAATACG
TG
GCGGTAAATCTGGCAACGTCACATCCCCATTATGATGAGGCTGGAAATGTTCTAAACATGGGCACATC
C
ATTGTGGAAAAGGGGAAGACAAAGTATGTGATTTTTAAGATCCCTGCCACAGTACCAGAGGGCAAGAAG
CAG
GGGAAGAGCCCCTGGAAGCACACAGAGGTGTTCTGCTCCATCCCATCCCGCTCCCTGCTCTCCCCAA
GC
TACTACCACAGCTTTGGAGTCACCGAGAACTATGTCATCTTCCTTGAGCAGCCTTTCAGGTTGGATAT
T
CTCAAGATGGCAACCGCATACATCCGGAGAATGAGCTGGGCCTCCTGCCTGGCTTTCCACAGGGAGGAG
AAG
ACTTATATCCACATCATCGACCAAAGGACCAGGCAGCCTGTGCAGACCAAGTTTTACACAGACGCCA
TG
GTGGTCTTCCATCACGTCAACGCCTACGAAGAGGACGGCTGCATCGTGTTTGACGTCATTGCCTACGA
G
GACAACAGCCTCTACCAGCTCTTCTACCTGGCCAACCTGAACCAGGACTTCAAGGAGAACTCCAGGCTC
ACC
TCGGTCCCCACCCTCAGGAGGTTTGCCGTGCCCCTCCACGTGGACAAGAATGCAGAAGTGGGCACAA
AT
TTAATCAAAGTGGCATCTACAACAGCCACGGCCCTGAAGGAAGAAGATGGCCAAGTCTACTGCCAGCC
G
GAATTTCTTTATGAAGGCTTAGAGCTTCCACGGGTCAATTATGCTCACAATGGAAAGCAATACCGATAT
GTC
TTTGCTACAGGAGTTCAGTGGAGTCCAATCCCAACCAAGATAATAAAATATGACATTCTCACAAAGT
CA
TCCTTAAAATGGAGAGAGGACGACTGCTGGCCAGCGGAACCCCTGTTTGTGCCCGCGCCAGGTGCCAA
G
GATGAGGATGACGGAGTAATCTTATCAGCCATTGTCTCTACTGATCCCCAAAAGCTGCCTTTTCTGCTC
ATT
CTGGATGCCAAAAGCTTTACGGAATTGGCCCGTGCCTCTGTTGATGTCGATATGCACATGGATCTCC
AT
GGATTATTCATTACAGACATGGACTGGGACACAAAAAAGCAGGCCGCTTCTGAGGAACAGCGGGACAG
G
GCTTCCGACTGCCACGGGGCTCCTCTGACCTGA


Translation (547 aa):
MDIIFGRNRKEQLEPVRAKVTGKIPAWLQGTLLRNGPGMHTVGESRYNHWFDGLALLHSFTIRDGEVYYR
S
KYLRSDTYNTNIEANRIVVSEFGTMAYPDPCKNIFS
KAFSYLSHTIPDFTDNCLINIMKCGEDFYATSE
T
NYIRKINPQTLETLEK
VDYRKYVAVNLATSHPHYDEAGNVLNMGTSIVEKGKTKYVIFKIPATVPEGKK
Q
GKSPWKHTEVFCSIPSRSLLSPSYYHSFGVTENYVIFLEQPFRLDILKMATAYIRRMSWASCLAFHREE
K
TYIHIIDQRTRQPVQTKFYTDAMVVFHHVNAYEEDGCIVFDVIAYEDNSLYQLFYLANLNQDFKENSRL
T
SVPTLRRFAVPLHVDK
NAEVGTNLIKVASTTATALKEEDGQVYCQPEFLYEGLELPRVNYAHNGKQYRY
V
FATGVQWSPIPTK
IIKYDILTKSSLKWREDDCWPAEPLFVPAPGAKDEDDGVILSAIVSTDPQKLPFLL
I
LDAKSFTELARASVDVDMHMDLHGLFITDMDWDTKKQAASEEQRDRASDCHGAPLT




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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