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Report for CCDS11097.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11097.1 Public Homo sapiens 17 SLC2A4 24 110 108 CCDS HistoryNCBI Gene:6517Re-query CCDS DB by CCDS ID:11097.1Re-query CCDS DB by GeneID:6517See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11097.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317370.13 ENSP00000320935.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317370.13Link to Ensembl Protein Viewer:ENSP00000320935.8Re-query CCDS DB by Nucleotide ID:ENST00000317370Re-query CCDS DB by Protein ID:ENSP00000320935
Original member Current member NCBI NM_001042.3 NP_001033.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042.3Link to Protein Sequence:NP_001033.1Re-query CCDS DB by Nucleotide ID:NM_001042Re-query CCDS DB by Protein ID:NP_001033Link to BLAST:NP_001033.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033.1 509 P14672-1 509 100% 0 0

Chromosomal Locations for CCDS 11097.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7281935 7281967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7283245 7283361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7283473 7283645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7283738 7283862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7283974 7284089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7284217 7284379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7284485 7284672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7284835 7284939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7285088 7285189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7285705 7285908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7286426 7286629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGCCGTCGGGCTTCCAACAGATAGGCTCCGAAGATGGGGAACCCCCTCAGCAGCGAGTGACTGGGACCC
TGGTCCTTGCTGTGTTCTCTGCGGTGCTTGGCTCCCTGCAGTTTGGGTACAACATTGGGGTCATCAATGC
CCCTCAGAAGGTGATTGAACAGAGCTACAATGAGACGTGGCTGGGGAGGCAGGGGCCTGAGGGACCCAGC
TCCATCCCTCCAGGCACCCTCACCACCCTCTGGGCCCTCTCCGTGGCCATCTTTTCCGTGGGCGGCATGA
TTTCCTCCTTCCTCATTGGTATCATCTCTCAGTGGCTTGGAAGGAAAAGGGCCATGCTGGTCAACAATGT
CCTGGCGGTGCTGGGGGGCAGCCTCATGGGCCTGGCCAATGCTGCTGCCTCCTATGAAATGCTCATCCTT
GGACGATTCCTCATTGGCGCCTACTCAGGGCTGACATCAGGGCTGGTGCCCATGTACGTGGGGGAGATTG
CTCCCACTCACCTGCGGGGCGCCCTGGGGACGCTCAACCAACTGGCCATTGTTATCGGCATTCTGATCGC
CCAGGTGCTGGGCTTGGAGTCCCTCCTGGGCACTGCCAGCCTGTGGCCACTGCTCCTGGGCCTCACAGTG
CTACCTGCCCTCCTGCAGCTGGTCCTGCTGCCCTTCTGTCCCGAGAGCCCCCGCTACCTCTACATCATCC
AGAATCTCGAGGGGCCTGCCAGAAAGAGTCTGAAGCGCCTGACAGGCTGGGCCGATGTTTCTGGAGTGCT
GGCTGAGCTGAAGGATGAGAAGCGGAAGCTGGAGCGTGAGCGGCCACTGTCCCTGCTCCAGCTCCTGGGC
AGCCGTACCCACCGGCAGCCCCTGATCATTGCGGTCGTGCTGCAGCTGAGCCAGCAGCTCTCTGGCATCA
ATGCTGTTTTCTATTATTCGACCAGCATCTTCGAGACAGCAGGGGTAGGCCAGCCTGCCTATGCCACCAT
AGGAGCTGGTGTGGTCAACACAGTCTTCACCTTGGTCTCGGTGTTGTTGGTGGAGCGGGCGGGGCGCCGG
ACGCTCCATCTCCTGGGCCTGGCGGGCATGTGTGGCTGTGCCATCCTGATGACTGTGGCTCTGCTCCTGC
TGGAGCGAGTTCCAGCCATGAGCTACGTCTCCATTGTGGCCATCTTTGGCTTCGTGGCATTTTTTGAGAT
TGGCCCTGGCCCCATTCCTTGGTTCATCGTGGCCGAGCTCTTCAGCCAGGGACCCCGCCCGGCAGCCATG
GCTGTGGCTGGTTTCTCCAACTGGACGAGCAACTTCATCATTGGCATGGGTTTCCAGTATGTTGCGGAGG
CTATGGGGCCCTACGTCTTCCTTCTATTTGCGGTCCTCCTGCTGGGCTTCTTCATCTTCACCTTCTTAAG
AGTACCTGAAACTCGAGGCCGGACGTTTGACCAGATCTCAGCTGCCTTCCACCGGACACCCTCTCTTTTA
GAGCAGGAGGTGAAACCCAGCACAGAACTTGAGTATTTAGGGCCAGATGAGAACGACTGA

Translation (509 aa):
MPSGFQQIGSEDGEPPQQRVTGTLVLAVFSAVLGSLQFGYNIGVINAPQKVIEQSYNETWLGRQGPEGPS
SIPPGTLTTLWALSVAIFSVGGMISSFLIGIISQWLGRKRAMLVNNVLAVLGGSLMGLANAAASYEMLIL
GRFLIGAYSGLTSGLVPMYVGEIAPTHLRGALGTLNQLAIVIGILIAQVLGLESLLGTASLWPLLLGLTV
LPALLQLVLLPFCPESPRYLYIIQNLEGPARKSLKRLTGWADVSGVLAELKDEKRKLERERPLSLLQLLG
SRTHRQPLIIAVVLQLSQQLSGINAVFYYSTSIFETAGVGQPAYATIGAGVVNTVFTLVSVLLVERAGRR
TLHLLGLAGMCGCAILMTVALLLLERVPAMSYVSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAM
AVAGFSNWTSNFIIGMGFQYVAEAMGPYVFLLFAVLLLGFFIFTFLRVPETRGRTFDQISAAFHRTPSLL
EQEVKPSTELEYLGPDEND


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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