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Report for CCDS11211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11211.1 Public Homo sapiens 17 SLC47A2 24 110 108 CCDS HistoryNCBI Gene:146802Re-query CCDS DB by CCDS ID:11211.1Re-query CCDS DB by GeneID:146802See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11211.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325411.9 ENSP00000326671.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000325411.9Link to Ensembl Protein Viewer:ENSP00000326671.5Re-query CCDS DB by Nucleotide ID:ENST00000325411Re-query CCDS DB by Protein ID:ENSP00000326671
Original member Current member NCBI NM_152908.5 NP_690872.2 Accepted alive Link to Nucleotide Sequence:NM_152908.5Link to Protein Sequence:NP_690872.2Re-query CCDS DB by Nucleotide ID:NM_152908Re-query CCDS DB by Protein ID:NP_690872Link to BLAST:NP_690872.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690872.2 602 Q86VL8-1 602 100% 0 0

Chromosomal Locations for CCDS 11211.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 19678686 19678906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19679952 19680039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19681367 19681461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19681538 19681670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19702605 19702674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19703092 19703167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19704070 19704178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19705436 19705503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19706648 19706761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19707746 19707843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19708302 19708507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19708716 19708760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19712703 19712745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19713825 19713973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19714721 19714789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19715116 19715217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19716433 19716555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGGACAGCCTCCAGGACACAGTGGCCCTGGACCATGGGGGCTGCTGCCCTGCCCTCAGCAGGCTGGTTC
CCAGAGGCTTTGGGACTGAGATGTGGACTCTCTTTGCCCTTTCTGGACCCCTGTTCCTGTTCCAGGTGCT
GACTTTTATGATCTACATCGTGAGCACTGTGTTCTGCGGGCACCTGGGCAAGGTGGAGCTGGCATCGGTG
ACCCTCGCGGTGGCCTTTGTCAATGTCTGCGGAGTTTCTGTAGGAGTTGGTTTGTCTTCGGCATGTGACA
CCTTGATGTCTCAGAGCTTCGGCAGCCCCAACAAGAAGCACGTGGGCGTGATCCTGCAGCGGGGCGCGCT
GGTCCTGCTCCTCTGCTGCCTCCCTTGCTGGGCGCTCTTCCTCAACACCCAGCACATCCTGCTGCTCTTC
CGGCAGGACCCGGACGTGTCCAGGTTGACCCAGGACTATGTAATGATTTTCATTCCAGGACTTCCGGTGA
TTTTTCTTTACAATCTGCTGGCAAAATATTTGCAAAATCAGGGATGGCTGAAGGGGCAGGAGGAGGAGTC
CCCATTCCAAACCCCGGGTTTGTCCATCCTCCATCCATCTCACTCACACCTTAGCAGGGCCAGTTTTCAT
TTATTTCAGAAGATCACCTGGCCCCAAGTCCTCAGTGGTGTGGTGGGCAACTGTGTCAACGGTGTGGCCA
ACTATGCCCTGGTTTCTGTGCTGAACCTGGGGGTCAGGGGCTCCGCCTATGCCAACATCATCTCCCAGTT
TGCACAGACCGTCTTCCTCCTTCTCTACATTGTGCTGAAGAAGCTGCACCTGGAGACGTGGGCAGGTTGG
TCCAGCCAGTGCCTGCAGGACTGGGGCCCCTTCTTCTCCCTGGCTGTCCCCAGCATGCTCATGATCTGTG
TTGAGTGGTGGGCCTATGAGATCGGGAGCTTCCTCATGGGGCTGCTCAGTGTGGTGGATCTCTCTGCCCA
GGCTGTCATCTACGAGGTGGCCACTGTGACCTACATGATTCCCTTGGGGCTCAGCATCGGGGTCTGTGTC
CGAGTGGGGATGGCTCTGGGGGCTGCGGATACTGTGCAGGCCAAGCGCTCGGCCGTCTCGGGCGTGCTCA
GCATAGTTGGCATTTCCCTGGTCCTGGGCACCCTGATAAGCATCCTGAAAAATCAGCTGGGGCATATTTT
TACCAATGATGAAGATGTCATTGCCCTGGTGAGCCAGGTCTTGCCGGTTTATAGTGTCTTTCACGTGTTT
GAGGCCATCTGTTGTGTCTATGGCGGAGTTCTGAGAGGAACTGGGAAGCAGGCCTTTGGTGCCGCTGTGA
ATGCCATCACATATTACATCATCGGCCTACCACTGGGCATCCTTCTGACCTTTGTGGTCAGAATGAGAAT
CATGGGCCTCTGGCTGGGCATGCTGGCCTGTGTCTTCCTGGCAACTGCTGCCTTTGTTGCTTATACTGCC
CGGCTGGACTGGAAGCTTGCTGCAGAGGAGGCTAAGAAACATTCAGGCCGGCAGCAGCAGCAGAGAGCAG
AGAGCACTGCAACCAGACCTGGGCCTGAGAAAGCAGTCCTATCTTCAGTGGCTACAGGCAGTTCCCCTGG
CATTACCTTGACAACGTATTCAAGGTCTGAGTGCCACGTGGACTTCTTCAGGACTCCAGAGGAGGCCCAC
GCCCTTTCAGCTCCTACCAGCAGACTATCAGTGAAACAGCTGGTCATCCGCCGTGGGGCTGCTCTGGGGG
CGGCGTCAGCCACACTGATGGTGGGGCTCACGGTCAGGATCCTAGCCACCAGGCACTAG

Translation (602 aa):
MDSLQDTVALDHGGCCPALSRLVPRGFGTEMWTLFALSGPLFLFQVLTFMIYIVSTVFCGHLGKVELASV
TLAVAFVNVCGVSVGVGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHILLLF
RQDPDVSRLTQDYVMIFIPGLPVIFLYNLLAKYLQNQGWLKGQEEESPFQTPGLSILHPSHSHLSRASFH
LFQKITWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANIISQFAQTVFLLLYIVLKKLHLETWAGW
SSQCLQDWGPFFSLAVPSMLMICVEWWAYEIGSFLMGLLSVVDLSAQAVIYEVATVTYMIPLGLSIGVCV
RVGMALGAADTVQAKRSAVSGVLSIVGISLVLGTLISILKNQLGHIFTNDEDVIALVSQVLPVYSVFHVF
EAICCVYGGVLRGTGKQAFGAAVNAITYYIIGLPLGILLTFVVRMRIMGLWLGMLACVFLATAAFVAYTA
RLDWKLAAEEAKKHSGRQQQQRAESTATRPGPEKAVLSSVATGSSPGITLTTYSRSECHVDFFRTPEEAH
ALSAPTSRLSVKQLVIRRGAALGAASATLMVGLTVRILATRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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