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Report for CCDS11212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11212.1 Public Homo sapiens 17 ALDH3A1 24 110 108 CCDS HistoryNCBI Gene:218Re-query CCDS DB by CCDS ID:11212.1Re-query CCDS DB by GeneID:218See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11212.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000225740.11 ENSP00000225740.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000225740.11Link to Ensembl Protein Viewer:ENSP00000225740.6Re-query CCDS DB by Nucleotide ID:ENST00000225740Re-query CCDS DB by Protein ID:ENSP00000225740
Original member Current member EBI ENST00000444455.5 ENSP00000388469.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000444455.5Link to Ensembl Protein Viewer:ENSP00000388469.1Re-query CCDS DB by Nucleotide ID:ENST00000444455Re-query CCDS DB by Protein ID:ENSP00000388469
Original member Current member EBI ENST00000457500.6 ENSP00000411821.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457500.6Link to Ensembl Protein Viewer:ENSP00000411821.2Re-query CCDS DB by Nucleotide ID:ENST00000457500Re-query CCDS DB by Protein ID:ENSP00000411821
Original member Current member NCBI NM_000691.5 NP_000682.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000691.5Link to Protein Sequence:NP_000682.3Re-query CCDS DB by Nucleotide ID:NM_000691Re-query CCDS DB by Protein ID:NP_000682Link to BLAST:NP_000682.3
Original member Current member NCBI NM_001135167.1 NP_001128639.1 Accepted alive Link to Nucleotide Sequence:NM_001135167.1Link to Protein Sequence:NP_001128639.1Re-query CCDS DB by Nucleotide ID:NM_001135167Re-query CCDS DB by Protein ID:NP_001128639Link to BLAST:NP_001128639.1
Original member Current member NCBI NM_001135168.1 NP_001128640.1 Accepted alive Link to Nucleotide Sequence:NM_001135168.1Link to Protein Sequence:NP_001128640.1Re-query CCDS DB by Nucleotide ID:NM_001135168Re-query CCDS DB by Protein ID:NP_001128640Link to BLAST:NP_001128640.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000682.3 453 P30838 453 100% 0 0
NP_001128639.1 453 P30838 453 100% 0 0
NP_001128640.1 453 P30838 453 100% 0 0

Chromosomal Locations for CCDS 11212.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 19738221 19738235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19738323 19738453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19738996 19739095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19739508 19739674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19740336 19740477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19741093 19741210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19742004 19742212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19742545 19742630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19743232 19743463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19744968 19745129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGAGCAAGATCAGCGAGGCCGTGAAGCGCGCCCGCGCCGCCTTCAGCTCGGGCAGGACCCGTCCGCTGC
AG
TTCCGGATCCAGCAGCTGGAGGCGCTGCAGCGCCTGATCCAGGAGCAGGAGCAGGAGCTGGTGGGCGC
G
CTGGCCGCAGACCTGCACAAGAATGAATGGAACGCCTACTATGAGGAGGTGGTGTACGTCCTAGAGGAG
ATC
GAGTACATGATCCAGAAGCTCCCTGAGTGGGCCGCGGATGAGCCCGTGGAGAAGACGCCCCAGACTC
AG
CAGGACGAGCTCTACATCCACTCGGAGCCACTGGGCGTGGTCCTCGTCATTGGCACCTGGAACTACCC
C
TTCAACCTCACCATCCAGCCCATGGTGGGCGCCATCGCTGCAGGGAACTCAGTGGTCCTCAAGCCCTCG
GAG
CTGAGTGAGAACATGGCGAGCCTGCTGGCTACCATCATCCCCCAGTACCTGGACAAGGATCTGTACC
CA
GTAATCAATGGGGGTGTCCCTGAGACCACGGAGCTGCTCAAGGAGAGGTTCGACCATATCCTGTACAC
G
GGCAGCACGGGGGTGGGGAAGATCATCATGACGGCTGCTGCCAAGCACCTGACCCCTGTCACGCTGGAG
CTG
GGAGGGAAGAGTCCCTGCTACGTGGACAAGAACTGTGACCTGGACGTGGCCTGCCGACGCATCGCCT
GG
GGGAAATTCATGAACAGTGGCCAGACCTGCGTGGCCCCTGACTACATCCTCTGTGACCCCTCGATCCA
G
AACCAAATTGTGGAGAAGCTCAAGAAGTCACTGAAAGAGTTCTACGGGGAAGATGCTAAGAAATCCCGG
GAC
TATGGAAGAATCATTAGTGCCCGGCACTTCCAGAGGGTGATGGGCCTGATTGAGGGCCAGAAGGTGG
CT
TATGGGGGCACCGGGGATGCCGCCACTCGCTACATAGCCCCCACCATCCTCACGGACGTGGACCCCCA
G
TCCCCGGTGATGCAAGAGGAGATCTTCGGGCCTGTGCTGCCCATCGTGTGCGTGCGCAGCCTGGAGGAG
GCC
ATCCAGTTCATCAACCAGCGTGAGAAGCCCCTGGCCCTCTACATGTTCTCCAGCAACGACAAGGTGA
TT
AAGAAGATGATTGCAGAGACATCCAGTGGTGGGGTGGCGGCCAACGATGTCATCGTCCACATCACCTT
G
CACTCTCTGCCCTTCGGGGGCGTGGGGAACAGCGGCATGGGATCCTACCATGGCAAGAAGAGCTTCGAG
ACT
TTCTCTCACCGCCGCTCTTGCCTGGTGAGGCCTCTGATGAATGATGAAGGCCTGAAGGTCAGATACC
CC
CCGAGCCCGGCCAAGATGACCCAGCACTGA


Translation (453 aa):
MSKISEAVKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNEWNAYYEEVVYVLEE
I
EYMIQKLPEWAADEPVEKTPQTQQDELYIHSEPLGVVLVIGTWNYPFNLTIQPMVGAIAA
GNSVVLKPS
E
LSENMASLLATIIPQYLDK
DLYPVINGGVPETTELLKERFDHILYTGSTGVGKIIMTAAAKHLTPVTLE
L
GGKSPCYVDKNCDLDVAC
RRIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFYGEDAKKSR
D
YGRIISARHFQRVMGLIEGQKVAYGGTGDAATRYI
APTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEE
A
IQFINQREKPLALYMFSSNDK
VIKKMIAETSSGGVAANDVIVHITLHSLPFGGVGNSGMGSYHGKKSFE
T
FSHRRSCLVRPLMNDEGLKVRYPPSPAK
MTQH



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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