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Report for CCDS11248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11248.1 Public Homo sapiens 17 PIPOX 24 110 108 CCDS HistoryNCBI Gene:51268Re-query CCDS DB by CCDS ID:11248.1Re-query CCDS DB by GeneID:51268See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11248.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323372.9 ENSP00000317721.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000323372.9Link to Ensembl Protein Viewer:ENSP00000317721.4Re-query CCDS DB by Nucleotide ID:ENST00000323372Re-query CCDS DB by Protein ID:ENSP00000317721
Original member Current member NCBI NM_016518.3 NP_057602.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016518.3Link to Protein Sequence:NP_057602.2Re-query CCDS DB by Nucleotide ID:NM_016518Re-query CCDS DB by Protein ID:NP_057602Link to BLAST:NP_057602.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057602.2 390 Q9P0Z9 390 100% 0 0

Chromosomal Locations for CCDS 11248.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 29043226 29043339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29044859 29045007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29052920 29053133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29053413 29053595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29054545 29054691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29055063 29055221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29055813 29055888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29056175 29056305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGGCGGCTCAGAAAGATCTCTGGGACGCCATTGTGATTGGGGCGGGGATCCAGGGCTGCTTCACTGCAT
ACCACCTGGCCAAACACAGGAAGAGGATCCTCCTGCTGGAGCAGTTCTTTCTACCACACTCCCGAGGAAG
CTCCCATGGACAAAGCCGGATAATCCGAAAGGCGTACCTGGAAGACTTTTACACCCGGATGATGCATGAG
TGCTATCAGATATGGGCCCAGCTGGAGCACGAGGCTGGAACCCAATTGCACAGGCAGACTGGATTACTGC
TGCTGGGAATGAAAGAGAATCAAGAATTAAAGACAATCCAGGCCAATCTGTCGAGGCAGAGGGTAGAACA
CCAGTGTCTTTCATCTGAGGAACTGAAGCAACGTTTCCCAAATATTCGGTTGCCCAGGGGAGAAGTGGGG
CTCTTGGACAATTCCGGAGGAGTTATCTATGCATATAAGGCCCTCAGAGCCCTGCAGGATGCAATTCGAC
AGCTAGGAGGCATAGTGCGTGACGGAGAGAAGGTGGTGGAGATAAACCCAGGGCTACTGGTCACGGTGAA
AACCACCTCCAGGAGCTACCAAGCTAAGAGCTTGGTCATCACAGCAGGTCCTTGGACCAACCAGCTCCTC
CGTCCCCTGGGCATTGAGATGCCTCTCCAGACCCTGCGGATCAACGTGTGTTACTGGCGAGAGATGGTTC
CTGGGAGCTATGGTGTGTCCCAGGCCTTTCCGTGCTTCCTGTGGCTGGGCTTGTGTCCCCACCACATCTA
CGGACTGCCCACAGGAGAGTACCCAGGGCTGATGAAGGTCAGCTATCACCACGGCAACCACGCAGACCCT
GAGGAGCGGGACTGCCCCACAGCACGCACAGACATCGGAGACGTCCAGATCCTGAGCAGCTTTGTCAGAG
ATCACTTACCTGATCTGAAGCCCGAGCCTGCTGTCATTGAGAGCTGCATGTACACGAATACCCCTGATGA
GCAGTTCATTCTCGATCGCCACCCAAAGTATGACAACATTGTCATTGGTGCTGGATTCTCTGGGCACGGG
TTCAAGCTGGCCCCTGTGGTGGGGAAGATCCTGTATGAATTAAGCATGAAATTAACACCATCTTATGACT
TGGCACCTTTTCGAATCAGCCGTTTCCCAAGCCTGGGCAAAGCCCACCTTTGA

Translation (390 aa):
MAAQKDLWDAIVIGAGIQGCFTAYHLAKHRKRILLLEQFFLPHSRGSSHGQSRIIRKAYLEDFYTRMMHE
CYQIWAQLEHEAGTQLHRQTGLLLLGMKENQELKTIQANLSRQRVEHQCLSSEELKQRFPNIRLPRGEVG
LLDNSGGVIYAYKALRALQDAIRQLGGIVRDGEKVVEINPGLLVTVKTTSRSYQAKSLVITAGPWTNQLL
RPLGIEMPLQTLRINVCYWREMVPGSYGVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVSYHHGNHADP
EERDCPTARTDIGDVQILSSFVRDHLPDLKPEPAVIESCMYTNTPDEQFILDRHPKYDNIVIGAGFSGHG
FKLAPVVGKILYELSMKLTPSYDLAPFRISRFPSLGKAHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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