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Report for CCDS11313.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11313.1 Public Homo sapiens 17 PIGW 24 110 108 CCDS HistoryNCBI Gene:284098Re-query CCDS DB by CCDS ID:11313.1Re-query CCDS DB by GeneID:284098See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11313.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000620233.1 ENSP00000480021.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620233.1Link to Ensembl Protein Viewer:ENSP00000480021.1Re-query CCDS DB by Nucleotide ID:ENST00000620233Re-query CCDS DB by Protein ID:ENSP00000480021
Original member Current member EBI ENST00000614443.2 ENSP00000482202.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000614443.2Link to Ensembl Protein Viewer:ENSP00000482202.1Re-query CCDS DB by Nucleotide ID:ENST00000614443Re-query CCDS DB by Protein ID:ENSP00000482202
Original member Current member NCBI NM_001346754.2 NP_001333683.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001346754.2Link to Protein Sequence:NP_001333683.1Re-query CCDS DB by Nucleotide ID:NM_001346754Re-query CCDS DB by Protein ID:NP_001333683Link to BLAST:NP_001333683.1
Original member Current member NCBI NM_001346755.2 NP_001333684.1 Accepted alive Link to Nucleotide Sequence:NM_001346755.2Link to Protein Sequence:NP_001333684.1Re-query CCDS DB by Nucleotide ID:NM_001346755Re-query CCDS DB by Protein ID:NP_001333684Link to BLAST:NP_001333684.1
Original member Current member NCBI NM_178517.5 NP_848612.2 Accepted alive Link to Nucleotide Sequence:NM_178517.5Link to Protein Sequence:NP_848612.2Re-query CCDS DB by Nucleotide ID:NM_178517Re-query CCDS DB by Protein ID:NP_848612Link to BLAST:NP_848612.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001333683.1 504 Q7Z7B1 504 100% 0 0
NP_001333684.1 504 Q7Z7B1 504 100% 0 0
NP_848612.2 504 Q7Z7B1 504 100% 0 0

Chromosomal Locations for CCDS 11313.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36537102 36538616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGTCTGAAAAGCAGATGAAGGAAGCTTTTGTCAGTAACCTCAATGGAACCACCGTGCTGGAAATCACCC
AGGGATTGTGCTTTCCTGCATTCTGTATCCTGTGCAGAGGGTTCCTGATCATTTTCTCACAGTACTTGTG
TTCTTTTTCACCTACCTGGAAAACTAGATTCCTCACTGACTTTGTTGTCCTAATAGTTCCCATGGTAGCC
ACTTTGACCATTTGGGCTTCATTTATCCTCCTTGAGCTTCTCGGTGTAATTATCTTTGGGGCAGGGCTGT
TGTATCAAATATACCGAAGGAGGACCTGCTATGCCAGACTGCCTTTCCTAAAAATCCTTGAAAAATTCTT
GAACATCAGTCTAGAATCAGAATACAATCCAGCCATCTCCTGTTTCCGTGTAATTACCAGTGCGTTTACT
GCTATTGCTATTTTGGCTGTGGACTTCCCACTTTTTCCCAGAAGATTTGCCAAAACTGAGCTCTATGGGA
CAGGAGCAATGGATTTTGGAGTAGGTGGCTTTGTTTTTGGGTCTGCAATGGTTTGTCTAGAGGTCAGGAG
GAGAAAATATATGGAAGGGTCCAAATTGCATTACTTTACAAACTCATTGTACTCTGTTTGGCCATTAGTC
TTCCTAGGAATCGGACGATTAGCCATTATAAAATCAATAGGCTATCAGGAACATTTAACAGAGTATGGAG
TTCACTGGAACTTTTTCTTTACCATAATAGTTGTGAAATTGATAACACCACTGCTGTTGATTATTTTTCC
CCTAAATAAGTCCTGGATTATTGCCCTCGGCATTACTGTATTATACCAGCTAGCCCTTGACTTTACCTCA
CTGAAGAGGTTAATATTATATGGCACTGATGGTAGTGGCACACGGGTTGGTCTATTAAATGCCAACCGCG
AAGGAATAATCTCTACCCTGGGGTATGTGGCAATACACATGGCTGGTGTGCAAACAGGGTTATATATGCA
TAAGAACCGATCACATATCAAAGACTTGATAAAAGTAGCCTGTTTTCTTTTACTGGCAGCTATTAGCCTC
TTCATATCTCTTTACGTAGTTCAAGTAAATGTAGAAGCAGTATCTCGAAGAATGGCAAATTTAGCCTTTT
GTATTTGGATAGTTGCTTCTAGCCTGATCCTTCTTAGTAGTTTATTACTGGGTGATATAATTTTGAGTTT
TGCCAAATTTCTAATTAAAGGAGCTCTAGTACCATGTTCTTGGAAACTTATCCAGTCACCTGTTACAAAT
AAAAAGCATTCAGAATCTCTAGTCCCTGAAGCCGAAAGAATGGAACCCAGTCTTTGTTTAATCACAGCTC
TAAACAGAAAACAGTTAATATTTTTCTTGCTGTCAAATATAACAACTGGCCTGATCAACCTGATGGTAGA
TACATTACACAGCAGTACCTTGTGGGCCTTATTTGTGGTCAATCTCTATATGTTTTCCAACTGTTTAATT
GTATATGTACTATATTTGCAAGATAAGACTGTACAATTTTGGTGA

Translation (504 aa):
MSEKQMKEAFVSNLNGTTVLEITQGLCFPAFCILCRGFLIIFSQYLCSFSPTWKTRFLTDFVVLIVPMVA
TLTIWASFILLELLGVIIFGAGLLYQIYRRRTCYARLPFLKILEKFLNISLESEYNPAISCFRVITSAFT
AIAILAVDFPLFPRRFAKTELYGTGAMDFGVGGFVFGSAMVCLEVRRRKYMEGSKLHYFTNSLYSVWPLV
FLGIGRLAIIKSIGYQEHLTEYGVHWNFFFTIIVVKLITPLLLIIFPLNKSWIIALGITVLYQLALDFTS
LKRLILYGTDGSGTRVGLLNANREGIISTLGYVAIHMAGVQTGLYMHKNRSHIKDLIKVACFLLLAAISL
FISLYVVQVNVEAVSRRMANLAFCIWIVASSLILLSSLLLGDIILSFAKFLIKGALVPCSWKLIQSPVTN
KKHSESLVPEAERMEPSLCLITALNRKQLIFFLLSNITTGLINLMVDTLHSSTLWALFVVNLYMFSNCLI
VYVLYLQDKTVQFW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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