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Report for CCDS11544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11544.1 Public Homo sapiens 17 B4GALNT2 24 110 108 CCDS HistoryNCBI Gene:124872Re-query CCDS DB by CCDS ID:11544.1Re-query CCDS DB by GeneID:124872See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11544.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300404.2 ENSP00000300404.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000300404.2Link to Ensembl Protein Viewer:ENSP00000300404.2Re-query CCDS DB by Nucleotide ID:ENST00000300404Re-query CCDS DB by Protein ID:ENSP00000300404
Original member Current member NCBI NM_153446.3 NP_703147.2 Accepted alive Link to Nucleotide Sequence:NM_153446.3Link to Protein Sequence:NP_703147.2Re-query CCDS DB by Nucleotide ID:NM_153446Re-query CCDS DB by Protein ID:NP_703147Link to BLAST:NP_703147.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_703147.2 566 Q8NHY0-1 566 100% 0 0

Chromosomal Locations for CCDS 11544.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 49133026 49133219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49141247 49141447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49142035 49142172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49152800 49152906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49156566 49156603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49159037 49159217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49160555 49160641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49164088 49164275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49166114 49166254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49168681 49168900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49169523 49169728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1701 nt):
ATGGGGAGCGCTGGCTTTTCCGTGGGAAAATTCCACGTGGAAGTGGCCTCTCGCGGCCGGGAATGTGTCT
CGGGGACGCCCGAGTGTGGGAATCGGCTCGGGAGTGCGGGCTTCGGGGCTCTCTGCTTGGAACTCAGAGG
CGCTGACCCAGCCTGGGGCCCGTTTGCTGCCCACGGGAGGAGCCGCCGTCAGGGCTCGAGATTTCTGTGG
CTCCTCAAGATATTGGTCATAATCCTGGTACTTGGCATTGTTGGATTTATGTTCGGAAGCATGTTCCTTC
AAGCAGTGTTCAGCAGCCCCAAGCCAGAACTCCCAAGTCCTGCCCCGGGTGTCCAGAAGCTGAAGCTTCT
GCCTGAGGAACGTCTCAGGAACCTCTTTTCCTACGATGGAATCTGGCTGTTCCCGAAAAATCAGTGCAAA
TGTGAAGCCAACAAAGAGCAGGGAGGTTACAACTTTCAGGATGCCTATGGCCAGAGCGACCTCCCAGCGG
TGAAAGCGAGGAGACAGGCTGAATTTGAACACTTTCAGAGGAGAGAAGGGCTGCCCCGCCCACTGCCCCT
GCTGGTCCAGCCCAACCTCCCCTTTGGGTACCCAGTCCACGGAGTGGAGGTGATGCCCCTGCACACGGTT
CCCATCCCAGGCCTCCAGTTTGAAGGACCCGATGCCCCCGTCTATGAGGTCACCCTGACAGCTTCTCTGG
GGACACTGAACACCCTTGCTGATGTCCCAGACAGTGTGGTGCAGGGCAGAGGCCAGAAGCAGCTGATCAT
TTCTACCAGTGACCGGAAGCTGTTGAAGTTCATTCTTCAGCACGTGACATACACCAGCACGGGGTACCAG
CACCAGAAGGTAGACATAGTGAGTCTGGAGTCCAGGTCCTCAGTGGCCAAGTTTCCAGTGACCATCCGCC
ATCCTGTCATACCCAAGCTATACGACCCTGGACCAGAGAGGAAGCTCAGAAACCTGGTTACCATTGCTAC
CAAGACTTTCCTCCGCCCCCACAAGCTCATGATCATGCTCCGGAGTATTCGAGAGTATTACCCAGACTTG
ACCGTAATAGTGGCTGATGACAGCCAGAAGCCCCTGGAAATTAAAGACAATCACGTGGAGTATTACACTA
TGCCCTTTGGGAAGGGTTGGTTTGCTGGTAGGAACCTGGCCATATCTCAGGTCACCACCAAATACGTTCT
CTGGGTGGACGATGATTTTCTCTTCAACGAGGAGACCAAGATTGAGGTGCTGGTGGATGTCCTGGAGAAA
ACAGAACTGGACGTGGTAGGCGGCAGTGTGCTGGGAAATGTGTTCCAGTTTAAGTTGTTGCTGGAACAGA
GTGAGAATGGGGCCTGCCTTCACAAGAGGATGGGATTTTTCCAACCCCTGGATGGCTTCCCCAGCTGCGT
GGTGACCAGTGGCGTGGTCAACTTCTTCCTGGCCCACACGGAGCGACTCCAAAGAGTTGGCTTTGATCCC
CGCCTGCAACGAGTGGCTCACTCAGAATTCTTCATTGATGGGCTAGGGACCCTACTCGTGGGGTCATGCC
CAGAAGTGATTATAGGTCACCAGTCTCGGTCTCCAGTGGTGGACTCAGAACTGGCTGCCCTAGAGAAGAC
CTACAATACATACCGGTCCAACACCCTCACCCGGGTCCAGTTCAAGCTGGCCCTCCACTACTTCAAGAAC
CATCTCCAATGTGCCGCATAA

Translation (566 aa):
MGSAGFSVGKFHVEVASRGRECVSGTPECGNRLGSAGFGALCLELRGADPAWGPFAAHGRSRRQGSRFLW
LLKILVIILVLGIVGFMFGSMFLQAVFSSPKPELPSPAPGVQKLKLLPEERLRNLFSYDGIWLFPKNQCK
CEANKEQGGYNFQDAYGQSDLPAVKARRQAEFEHFQRREGLPRPLPLLVQPNLPFGYPVHGVEVMPLHTV
PIPGLQFEGPDAPVYEVTLTASLGTLNTLADVPDSVVQGRGQKQLIISTSDRKLLKFILQHVTYTSTGYQ
HQKVDIVSLESRSSVAKFPVTIRHPVIPKLYDPGPERKLRNLVTIATKTFLRPHKLMIMLRSIREYYPDL
TVIVADDSQKPLEIKDNHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFLFNEETKIEVLVDVLEK
TELDVVGGSVLGNVFQFKLLLEQSENGACLHKRMGFFQPLDGFPSCVVTSGVVNFFLAHTERLQRVGFDP
RLQRVAHSEFFIDGLGTLLVGSCPEVIIGHQSRSPVVDSELAALEKTYNTYRSNTLTRVQFKLALHYFKN
HLQCAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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