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Report for CCDS11602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11602.1 Public Homo sapiens 17 EPX 24 110 108 CCDS HistoryNCBI Gene:8288Re-query CCDS DB by CCDS ID:11602.1Re-query CCDS DB by GeneID:8288See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11602.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000225371.6 ENSP00000225371.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000225371.6Link to Ensembl Protein Viewer:ENSP00000225371.5Re-query CCDS DB by Nucleotide ID:ENST00000225371Re-query CCDS DB by Protein ID:ENSP00000225371
Original member Current member NCBI NM_000502.6 NP_000493.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000502.6Link to Protein Sequence:NP_000493.1Re-query CCDS DB by Nucleotide ID:NM_000502Re-query CCDS DB by Protein ID:NP_000493Link to BLAST:NP_000493.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000493.1 715 P11678 715 100% 0 0

Chromosomal Locations for CCDS 11602.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 58192847 58192922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58193038 58193131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58193371 58193546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58193714 58193831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58193963 58194092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58194964 58195170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58196939 58197257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58199040 58199200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58199539 58199794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58200225 58200395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58203081 58203318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58204222 58204423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2148 nt):
ATGCATCTGCTCCCAGCCCTGGCAGGGGTCCTGGCCACACTCGTCCTCGCCCAGCCCTGTGAGGGCACTG
ACCCAGCCTCCCCTGGGGCAGTGGAGACCTCGGTCCTGCGAGACTGCATAGCAGAGGCCAAGTTGCTGGT
GGATGCTGCCTACAATTGGACCCAGAAGAGCATCAAGCAGCGGCTTCGCAGCGGTTCAGCCAGCCCCATG
GACCTCCTGTCCTACTTCAAACAACCGGTAGCAGCCACCAGGACAGTTGTTCGGGCCGCAGATTATATGC
ATGTGGCTTTGGGGCTGCTTGAAGAGAAGTTACAACCCCAGCGGTCCGGACCCTTCAATGTCACTGATGT
GCTAACAGAACCACAGCTGCGGCTGCTGTCCCAGGCCAGTGGCTGTGCTCTCCGGGACCAGGCCGAGCGC
TGCAGCGACAAGTACCGCACCATCACTGGACGGTGCAACAACAAGAGGAGACCCTTGCTAGGGGCCTCCA
ACCAGGCTCTGGCTCGCTGGCTGCCCGCCGAGTATGAGGATGGGCTGTCGCTCCCCTTCGGCTGGACCCC
CAGCAGGAGGCGCAATGGCTTCCTTCTCCCTCTTGTCCGGGCTGTCTCCAACCAGATTGTGCGCTTCCCC
AATGAGAGACTGACCTCCGACCGTGGCCGAGCCCTCATGTTCATGCAGTGGGGCCAGTTCATTGACCATG
ACCTGGACTTCTCCCCGGAGTCCCCGGCCAGAGTGGCCTTCACTGCAGGCGTTGACTGTGAGAGGACCTG
CGCCCAGCTGCCCCCCTGCTTTCCCATCAAGATCCCACCCAATGACCCCCGCATCAAGAACCAGCGTGAC
TGCATCCCTTTCTTCCGCTCGGCACCCTCATGCCCCCAAAACAAGAACAGAGTCCGCAACCAGATCAACG
CGCTCACCTCCTTTGTGGACGCCAGCATGGTGTATGGCAGTGAGGTCTCCCTCTCGCTGCGGCTCCGCAA
CCGGACCAACTACCTGGGGCTGCTGGCCATCAACCAGCGCTTTCAAGACAACGGCCGGGCCCTGCTGCCC
TTCGACAACCTGCACGATGACCCCTGTCTCCTCACCAACCGCTCGGCGCGCATCCCCTGCTTCCTGGCAG
GTGACACCCGATCAACGGAAACCCCCAAACTGGCAGCCATGCACACCCTCTTTATGCGAGAGCACAACCG
GCTGGCCACCGAGCTGAGACGCCTGAATCCCCGGTGGAATGGAGACAAACTGTACAATGAGGCTCGGAAG
ATCATGGGGGCCATGGTCCAGATCATCACCTACCGAGACTTTCTGCCCCTGGTTCTGGGCAAGGCCCGGG
CCAGGAGAACCCTGGGGCACTACAGGGGGTACTGCTCCAATGTGGACCCACGGGTGGCCAATGTCTTCAC
CCTGGCCTTCCGCTTTGGCCACACAATGCTCCAGCCCTTCATGTTCCGCTTGGACAGTCAGTACCGGGCC
TCCGCACCCAACTCGCATGTCCCACTTAGCTCTGCCTTCTTTGCCAGCTGGCGGATCGTGTATGAAGGGG
GCATCGACCCCATCCTCCGGGGCCTCATGGCCACCCCTGCCAAGCTGAACCGTCAGGATGCCATGTTAGT
GGATGAGCTCCGGGACCGGCTGTTTCGGCAAGTGAGGAGGATTGGGCTGGACCTGGCAGCTCTCAACATG
CAACGAAGCCGGGACCACGGCCTTCCAGGGTACAATGCTTGGAGGCGCTTCTGTGGGCTCTCCCAGCCCC
GGAATTTGGCACAGCTTAGCCGGGTGCTGAAAAACCAGGACTTGGCAAGGAAGTTCCTGAATTTGTATGG
AACACCTGACAACATTGACATCTGGATTGGGGCCATCGCTGAGCCTCTTTTGCCGGGGGCTCGAGTGGGG
CCTCTTCTGGCTTGTCTGTTCGAGAACCAGTTCAGAAGAGCCCGAGACGGAGACAGGTTCTGGTGGCAGA
AACGAGGTGTTTTCACCAAAAGACAGCGCAAGGCCCTGAGCAGAATTTCCTTGTCTCGAATTATATGTGA
CAATACCGGTATCACCACGGTTTCAAGGGACATCTTCAGAGCCAACATCTACCCTCGGGGCTTTGTGAAC
TGCAGCCGTATCCCCAGGTTGAACCTATCAGCCTGGCGAGGGACATGA

Translation (715 aa):
MHLLPALAGVLATLVLAQPCEGTDPASPGAVETSVLRDCIAEAKLLVDAAYNWTQKSIKQRLRSGSASPM
DLLSYFKQPVAATRTVVRAADYMHVALGLLEEKLQPQRSGPFNVTDVLTEPQLRLLSQASGCALRDQAER
CSDKYRTITGRCNNKRRPLLGASNQALARWLPAEYEDGLSLPFGWTPSRRRNGFLLPLVRAVSNQIVRFP
NERLTSDRGRALMFMQWGQFIDHDLDFSPESPARVAFTAGVDCERTCAQLPPCFPIKIPPNDPRIKNQRD
CIPFFRSAPSCPQNKNRVRNQINALTSFVDASMVYGSEVSLSLRLRNRTNYLGLLAINQRFQDNGRALLP
FDNLHDDPCLLTNRSARIPCFLAGDTRSTETPKLAAMHTLFMREHNRLATELRRLNPRWNGDKLYNEARK
IMGAMVQIITYRDFLPLVLGKARARRTLGHYRGYCSNVDPRVANVFTLAFRFGHTMLQPFMFRLDSQYRA
SAPNSHVPLSSAFFASWRIVYEGGIDPILRGLMATPAKLNRQDAMLVDELRDRLFRQVRRIGLDLAALNM
QRSRDHGLPGYNAWRRFCGLSQPRNLAQLSRVLKNQDLARKFLNLYGTPDNIDIWIGAIAEPLLPGARVG
PLLACLFENQFRRARDGDRFWWQKRGVFTKRQRKALSRISLSRIICDNTGITTVSRDIFRANIYPRGFVN
CSRIPRLNLSAWRGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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