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Report for CCDS11747.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11747.1 Public Homo sapiens 17 ST6GALNAC2 24 110 108 CCDS HistoryNCBI Gene:10610Re-query CCDS DB by CCDS ID:11747.1Re-query CCDS DB by GeneID:10610See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11747.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000225276.10 ENSP00000225276.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000225276.10Link to Ensembl Protein Viewer:ENSP00000225276.4Re-query CCDS DB by Nucleotide ID:ENST00000225276Re-query CCDS DB by Protein ID:ENSP00000225276
Original member Current member NCBI NM_006456.3 NP_006447.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006456.3Link to Protein Sequence:NP_006447.2Re-query CCDS DB by Nucleotide ID:NM_006456Re-query CCDS DB by Protein ID:NP_006447Link to BLAST:NP_006447.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006447.2 374 Q9UJ37 374 100% 0 0

Chromosomal Locations for CCDS 11747.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 76566104 76566271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76567453 76567552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76568713 76568796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76570565 76570668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76572637 76572775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76573195 76573363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76574365 76574539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76578756 76578816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 76585684 76585808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGGGGCTCCCGCGCGGGTCGTTCTTCTGGCTGCTGCTCCTGCTCACGGCTGCCTGCTCGGGGCTCCTCT
TTGCCCTGTACTTCTCGGCGGTGCAGCGGTACCCGGGGCCAGCGGCCGGAGCCAGGGACACCACATCATT
TGAAGCATTCTTTCAATCCAAGGCATCGAATTCTTGGACAGGAAAGGGCCAGGCCTGCCGACACCTGCTT
CACCTGGCCATTCAGCGGCACCCCCACTTCCGTGGCCTGTTCAATCTCTCCATTCCAGTGCTGCTGTGGG
GGGACCTCTTCACCCCAGCGCTCTGGGACCGCCTGAGCCAACACAAAGCCCCGTATGGCTGGCGGGGGCT
CTCTCACCAAGTCATCGCCTCCACCCTGAGCCTTCTGAACGGCTCAGAGAGTGCCAAGCTGTTTGCCCCG
CCCAGGGACACCCCTCCAAAGTGTATCCGGTGTGCCGTGGTGGGCAACGGAGGCATTCTGAATGGGTCCC
GCCAGGGTCCCAACATCGATGCCCATGACTATGTATTCAGACTCAATGGAGCTGTGATCAAAGGCTTCGA
GCGCGATGTGGGCACCAAGACTTCCTTCTATGGTTTCACTGTGAACACGATGAAGAACTCCCTCGTCTCC
TACTGGAATCTGGGCTTCACCTCCGTGCCACAAGGACAGGACCTGCAGTATATCTTCATCCCCTCAGACA
TCCGCGACTATGTGATGCTGAGATCGGCCATTCTGGGCGTGCCTGTCCCTGAGGGCCTAGATAAAGGGGA
CAGGCCGCACGCCTATTTTGGACCAGAAGCCTCTGCCAGTAAATTCAAGCTGCTACATCCGGACTTCATC
AGCTACCTGACAGAAAGGTTCTTGAAATCAAAGTTGATTAACACACATTTTGGAGACCTATATATGCCTA
GTACCGGGGCTCTCATGCTGCTGACAGCTTTGCATACCTGTGACCAGGTCAGTGCCTATGGATTCATCAC
AAGCAACTACTGGAAATTTTCCGACCACTATTTCGAACGAAAAATGAAGCCATTGATATTTTATGCAAAC
CACGATCTGTCCCTGGAAGCTGCCCTGTGGAGGGACCTGCACAAGGCCGGCATCCTTCAGCTGTACCAGC
GCTGA

Translation (374 aa):
MGLPRGSFFWLLLLLTAACSGLLFALYFSAVQRYPGPAAGARDTTSFEAFFQSKASNSWTGKGQACRHLL
HLAIQRHPHFRGLFNLSIPVLLWGDLFTPALWDRLSQHKAPYGWRGLSHQVIASTLSLLNGSESAKLFAP
PRDTPPKCIRCAVVGNGGILNGSRQGPNIDAHDYVFRLNGAVIKGFERDVGTKTSFYGFTVNTMKNSLVS
YWNLGFTSVPQGQDLQYIFIPSDIRDYVMLRSAILGVPVPEGLDKGDRPHAYFGPEASASKFKLLHPDFI
SYLTERFLKSKLINTHFGDLYMPSTGALMLLTALHTCDQVSAYGFITSNYWKFSDHYFERKMKPLIFYAN
HDLSLEAALWRDLHKAGILQLYQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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