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Report for CCDS12008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12008.1 Public Homo sapiens 18 PTGR3 24 110 108 CCDS HistoryNCBI Gene:284273Re-query CCDS DB by CCDS ID:12008.1Re-query CCDS DB by GeneID:284273See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12008.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322342.4 ENSP00000323678.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322342.4Link to Ensembl Protein Viewer:ENSP00000323678.3Re-query CCDS DB by Nucleotide ID:ENST00000322342Re-query CCDS DB by Protein ID:ENSP00000323678
Original member Current member NCBI NM_175907.6 NP_787103.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175907.6Link to Protein Sequence:NP_787103.1Re-query CCDS DB by Nucleotide ID:NM_175907Re-query CCDS DB by Protein ID:NP_787103Link to BLAST:NP_787103.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_787103.1 377 Q8N4Q0-1 377 100% 0 0

Chromosomal Locations for CCDS 12008.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 75201416 75202340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 75208850 75209058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGCTGCGGCTGGTGCCCACCGGGGCCCGGGCCATCGTGGACATGTCGTACGCCCGCCACTTCCTGGACT
TCCAGGGCTCCGCCATTCCCCAAGCCATGCAGAAGCTGGTGGTGACCCGGCTGAGCCCCAACTTCCGCGA
GGCCGTCACCCTGAGCCGGGACTGCCCGGTGCCGCTCCCCGGGGACGGAGACCTCCTCGTCCGGAACCGA
TTTGTTGGTGTTAACGCATCTGACATCAACTATTCAGCAGGCCGCTATGACCCCTCAGTTAAGCCTCCCT
TTGACATAGGTTTCGAAGGCATTGGGGAGGTGGTGGCCCTAGGCCTCTCTGCTAGTGCCAGATACACAGT
TGGCCAAGCTGTGGCTTACATGGCACCTGGTTCTTTTGCTGAGTACACAGTTGTGCCTGCCAGCATTGCA
ACTCCAGTGCCCTCAGTGAAACCCGAGTATCTTACCCTGCTGGTAAGTGGCACCACCGCATACATCAGCC
TGAAAGAGCTCGGAGGACTGTCGGAAGGGAAAAAAGTTTTGGTGACAGCAGCAGCTGGGGGAACGGGCCA
GTTTGCCATGCAGCTTTCAAAGAAGGCAAAGTGCCATGTAATTGGAACCTGCTCTTCTGATGAAAAGTCT
GCTTTTCTGAAATCTCTTGGCTGTGATCGTCCTATCAACTATAAAACTGAACCCGTAGGTACCGTCCTTA
AGCAGGAGTACCCTGAAGGTGTCGATGTGGTCTATGAATCTGTTGGGGGAGCCATGTTTGACTTGGCTGT
AGACGCCCTGGCTACGAAAGGGCGCTTGATAGTAATAGGGTTTATCTCTGGCTACCAAACTCCTACTGGC
CTTTCGCCTGTGAAAGCAGGAACATTGCCAGCCAAACTGCTCAAGAAATCTGCCAGCGTACAGGGCTTCT
TCCTGAACCATTACCTTTCTAAGTATCAAGCAGCCATGAGCCACTTGCTCGAGATGTGTGTGAGCGGAGA
CCTGGTTTGTGAGGTGGACCTTGGAGATCTGTCTCCAGAGGGCAGGTTTACTGGCCTGGAGTCCATATTC
CGTGCTGTCAATTATATGTACATGGGAAAAAACACTGGAAAAATTGTAGTTGAATTACCTCACTCTGTCA
ACAGTAAGCTGTAA

Translation (377 aa):
MLRLVPTGARAIVDMSYARHFLDFQGSAIPQAMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNR
FVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVAYMAPGSFAEYTVVPASIA
TPVPSVKPEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKS
AFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTPTG
LSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIF
RAVNYMYMGKNTGKIVVELPHSVNSKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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