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Report for CCDS12258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12258.1 Public Homo sapiens 19 PLPPR2 24 110 108 CCDS HistoryNCBI Gene:64748Re-query CCDS DB by CCDS ID:12258.1Re-query CCDS DB by GeneID:64748See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12258.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000251473.9 ENSP00000251473.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000251473.9Link to Ensembl Protein Viewer:ENSP00000251473.4Re-query CCDS DB by Nucleotide ID:ENST00000251473Re-query CCDS DB by Protein ID:ENSP00000251473
Original member Current member NCBI NM_001393894.1 NP_001380823.1 Accepted alive Link to Nucleotide Sequence:NM_001393894.1Link to Protein Sequence:NP_001380823.1Re-query CCDS DB by Nucleotide ID:NM_001393894Re-query CCDS DB by Protein ID:NP_001380823Link to BLAST:NP_001380823.1
Original member Current member NCBI NM_022737.3 NP_073574.2 Accepted alive Link to Nucleotide Sequence:NM_022737.3Link to Protein Sequence:NP_073574.2Re-query CCDS DB by Nucleotide ID:NM_022737Re-query CCDS DB by Protein ID:NP_073574Link to BLAST:NP_073574.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001380823.1 343 Q96GM1-1 343 100% 0 0
NP_073574.2 343 Q96GM1-1 343 100% 0 0

Chromosomal Locations for CCDS 12258.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11357674 11357739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11359532 11359720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11359821 11359956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11361217 11361488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11362513 11362689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11363713 11363819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11364161 11364212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11364347 11364379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGCGGGAGGGAGACCGCATCTGAAGAGGAGTTTCTCCATCATCCCCTGCTTTGTCTTCGTGGAGTCGG
TGCTGCTGGGCATTGTGATCCTGCTTGCTTACCGCCTGGAGTTCACGGACACCTTCCCTGTGCACACCCA
GGGATTCTTCTGCTATGACAGTACCTACGCCAAGCCCTACCCAGGGCCTGAGGCTGCCAGCCGAGTGCCT
CCTGCTCTTGTCTACGCACTGGTCACTGCCGGGCCCACCCTCACGATCCTGCTGGGAGAGCTGGCGCGTG
CCTTTTTCCCTGCACCACCTTCAGCCGTCCCAGTCATCGGGGAGAGCACCATCGTGTCTGGGGCCTGCTG
CCGCTTCAGCCCCCCAGTGCGGAGGCTGGTCCGCTTCCTGGGGGTCTACTCCTTCGGCCTCTTCACCACG
ACCATCTTCGCCAACGCGGGGCAGGTGGTGACCGGCAATCCCACGCCACACTTCCTGTCCGTGTGCCGCC
CCAACTACACGGCCCTGGGCTGCCTGCCACCTTCTCCGGATCGGCCAGGTCCCGACCGCTTTGTCACTGA
CCAGGGTGCCTGCGCTGGCAGTCCCAGCCTCGTGGCCGCCGCGCGCCGCGCCTTCCCCTGCAAGGATGCG
GCCCTCTGCGCCTACGCGGTCACCTACACAGCGATGTACGTGACTCTCGTGTTCCGCGTGAAGGGCTCCC
GCCTGGTCAAACCCTCGCTCTGCCTGGCCTTGCTGTGCCCGGCCTTCCTGGTGGGCGTGGTCCGCGTGGC
CGAGTACCGAAACCACTGGTCGGACGTGCTGGCTGGCTTCCTGACAGGGGCGGCCATCGCCACCTTTTTG
GTCACCTGCGTTGTGCATAACTTTCAGAGCCGGCCACCCTCTGGCCGAAGGCTCTCTCCCTGGGAGGACC
TGGGCCAAGCCCCCACCATGGATAGCCCCCTCGAAAAGAACCCGAGGTCTGCAGGCCGCATTCGACACCG
GCACGGCTCACCCCATCCAAGTCGCAGAACTGCGCCCGCCGTGGCCACCTGA

Translation (343 aa):
MAGGRPHLKRSFSIIPCFVFVESVLLGIVILLAYRLEFTDTFPVHTQGFFCYDSTYAKPYPGPEAASRVP
PALVYALVTAGPTLTILLGELARAFFPAPPSAVPVIGESTIVSGACCRFSPPVRRLVRFLGVYSFGLFTT
TIFANAGQVVTGNPTPHFLSVCRPNYTALGCLPPSPDRPGPDRFVTDQGACAGSPSLVAAARRAFPCKDA
ALCAYAVTYTAMYVTLVFRVKGSRLVKPSLCLALLCPAFLVGVVRVAEYRNHWSDVLAGFLTGAAIATFL
VTCVVHNFQSRPPSGRRLSPWEDLGQAPTMDSPLEKNPRSAGRIRHRHGSPHPSRRTAPAVAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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