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Report for CCDS12563.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12563.1 Public Homo sapiens 19 ITPKC 24 110 108 CCDS HistoryNCBI Gene:80271Re-query CCDS DB by CCDS ID:12563.1Re-query CCDS DB by GeneID:80271See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12563.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263370.3 ENSP00000263370.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263370.3Link to Ensembl Protein Viewer:ENSP00000263370.1Re-query CCDS DB by Nucleotide ID:ENST00000263370Re-query CCDS DB by Protein ID:ENSP00000263370
Original member Current member EBI ENST00000699490.1 ENSP00000514401.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000699490.1Link to Ensembl Protein Viewer:ENSP00000514401.1Re-query CCDS DB by Nucleotide ID:ENST00000699490Re-query CCDS DB by Protein ID:ENSP00000514401
Original member Current member NCBI NM_025194.3 NP_079470.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025194.3Link to Protein Sequence:NP_079470.1Re-query CCDS DB by Nucleotide ID:NM_025194Re-query CCDS DB by Protein ID:NP_079470Link to BLAST:NP_079470.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079470.1 683 Q96DU7 683 100% 0 0

Chromosomal Locations for CCDS 12563.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40717136 40718290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40725340 40725439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40729202 40729415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40733160 40733364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40736986 40737087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40737698 40737769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40739357 40739560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2052 nt):
ATGAGGCGCTGCCCGTGCCGTGGGAGCCTGAACGAGGCGGAGGCCGGGGCGCTGCCCGCGGCGGCCCGCA
TGGGACTGGAGGCGCCGCGAGGAGGGCGGCGGCGGCAGCCGGGACAGCAGCGACCTGGGCCCGGCGCAGG
GGCCCCGGCGGGGCGGCCGGAGGGGGGCGGGCCCTGGGCCCGGACAGAGGGGTCCAGCCTCCACAGCGAG
CCTGAGAGGGCCGGCCTCGGGCCTGCGCCGGGGACAGAGAGTCCGCAGGCAGAATTCTGGACAGACGGAC
AGACTGAGCCCGCGGCAGCTGGCCTTGGAGTAGAGACCGAGAGGCCCAAGCAAAAGACGGAGCCAGACAG
GTCCAGCCTCCGGACGCATCTAGAATGGAGCTGGTCAGAGCTGGAGACGACTTGTCTTTGGACGGAGACC
GGGACAGATGGCCTTTGGACTGATCCGCACAGGTCCGACCTCCAGTTTCAGCCCGAGGAGGCCAGCCCCT
GGACACAGCCAGGGGTTCATGGGCCCTGGACAGAGCTGGAAACGCATGGGTCACAGACTCAGCCAGAGAG
GGTCAAGTCCTGGGCTGATAACCTCTGGACCCACCAGAACAGTTCCAGCCTCCAGACTCACCCAGAAGGA
GCCTGTCCCTCAAAAGAGCCAAGTGCTGATGGCTCCTGGAAAGAATTGTATACTGATGGCTCCAGGACAC
AACAGGATATTGAAGGTCCCTGGACAGAGCCATATACTGATGGCTCCCAGAAAAAACAGGATACTGAAGC
AGCCAGGAAACAGCCTGGCACTGGTGGTTTCCAAATACAACAGGATACTGATGGCTCCTGGACACAACCT
AGCACTGACGGTTCCCAGACAGCACCTGGGACAGACTGCCTCTTGGGAGAGCCTGAGGATGGCCCATTAG
AGGAACCAGAGCCTGGAGAATTGCTGACTCACCTGTACTCTCACCTGAAGTGTAGCCCCCTGTGCCCTGT
GCCCCGCCTCATCATTACCCCTGAGACCCCTGAGCCTGAGGCCCAGCCAGTGGGACCCCCCTCCCGGGTT
GAGGGGGGCAGCGGCGGCTTCTCCTCTGCCTCTTCTTTCGACGAGTCTGAGGATGACGTGGTGGCCGGGG
GCGGAGGTGCCAGCGATCCCGAGGACAGGTCTGGGAGCAAACCCTGGAAGAAGCTGAAGACAGTTCTGAA
GTATTCACCCTTTGTGGTCTCCTTCCGAAAACACTACCCTTGGGTCCAGCTTTCTGGACATGCTGGGAAC
TTCCAGGCAGGAGAGGATGGTCGGATTCTGAAACGTTTCTGTCAGTGTGAGCAGCGCAGCCTGGAGCAGC
TGATGAAAGACCCGCTGCGACCTTTCGTGCCTGCCTACTATGGCATGGTGCTGCAGGATGGCCAGACCTT
CAACCAGATGGAAGACCTCCTGGCTGACTTTGAGGGCCCCTCCATTATGGACTGCAAGATGGGCAGCAGG
ACCTATCTGGAAGAGGAGCTAGTGAAGGCACGGGAACGTCCCCGTCCCCGGAAGGACATGTATGAGAAGA
TGGTGGCTGTGGACCCTGGGGCCCCTACCCCTGAGGAGCATGCCCAGGGTGCAGTCACCAAGCCCCGCTA
CATGCAGTGGAGGGAAACCATGAGCTCCACCTCTACCCTGGGCTTCCGGATCGAGGGCATCAAGAAGGCA
GATGGGACCTGTAACACCAACTTCAAGAAGACGCAGGCACTGGAGCAGGTGACAAAAGTGCTGGAGGACT
TCGTGGATGGAGACCACGTCATCCTGCAAAAGTACGTGGCATGCCTAGAAGAACTTCGTGAAGCTCTGGA
GATCTCCCCCTTCTTCAAGACCCACGAGGTGGTAGGCAGCTCCCTCCTCTTCGTGCACGACCACACCGGC
CTGGCCAAGGTCTGGATGATAGACTTCGGCAAGACGGTGGCCTTGCCCGACCACCAGACGCTCAGCCACA
GGCTGCCCTGGGCTGAGGGCAACCGTGAGGACGGCTACCTCTGGGGCCTGGACAACATGATCTGCCTCCT
GCAGGGGCTGGCACAGAGCTGA

Translation (683 aa):
MRRCPCRGSLNEAEAGALPAAARMGLEAPRGGRRRQPGQQRPGPGAGAPAGRPEGGGPWARTEGSSLHSE
PERAGLGPAPGTESPQAEFWTDGQTEPAAAGLGVETERPKQKTEPDRSSLRTHLEWSWSELETTCLWTET
GTDGLWTDPHRSDLQFQPEEASPWTQPGVHGPWTELETHGSQTQPERVKSWADNLWTHQNSSSLQTHPEG
ACPSKEPSADGSWKELYTDGSRTQQDIEGPWTEPYTDGSQKKQDTEAARKQPGTGGFQIQQDTDGSWTQP
STDGSQTAPGTDCLLGEPEDGPLEEPEPGELLTHLYSHLKCSPLCPVPRLIITPETPEPEAQPVGPPSRV
EGGSGGFSSASSFDESEDDVVAGGGGASDPEDRSGSKPWKKLKTVLKYSPFVVSFRKHYPWVQLSGHAGN
FQAGEDGRILKRFCQCEQRSLEQLMKDPLRPFVPAYYGMVLQDGQTFNQMEDLLADFEGPSIMDCKMGSR
TYLEEELVKARERPRPRKDMYEKMVAVDPGAPTPEEHAQGAVTKPRYMQWRETMSSTSTLGFRIEGIKKA
DGTCNTNFKKTQALEQVTKVLEDFVDGDHVILQKYVACLEELREALEISPFFKTHEVVGSSLLFVHDHTG
LAKVWMIDFGKTVALPDHQTLSHRLPWAEGNREDGYLWGLDNMICLLQGLAQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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