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Report for CCDS12602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12602.1 Public Homo sapiens 19 PAFAH1B3 24 110 108 CCDS HistoryNCBI Gene:5050Re-query CCDS DB by CCDS ID:12602.1Re-query CCDS DB by GeneID:5050See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12602.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262890.8 ENSP00000262890.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262890.8Link to Ensembl Protein Viewer:ENSP00000262890.2Re-query CCDS DB by Nucleotide ID:ENST00000262890Re-query CCDS DB by Protein ID:ENSP00000262890
Original member Current member EBI ENST00000538771.5 ENSP00000444935.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538771.5Link to Ensembl Protein Viewer:ENSP00000444935.1Re-query CCDS DB by Nucleotide ID:ENST00000538771Re-query CCDS DB by Protein ID:ENSP00000444935
Original member Current member NCBI NM_001145939.2 NP_001139411.1 Accepted alive Link to Nucleotide Sequence:NM_001145939.2Link to Protein Sequence:NP_001139411.1Re-query CCDS DB by Nucleotide ID:NM_001145939Re-query CCDS DB by Protein ID:NP_001139411Link to BLAST:NP_001139411.1
Original member Current member NCBI NM_001145940.1 NP_001139412.1 Accepted alive Link to Nucleotide Sequence:NM_001145940.1Link to Protein Sequence:NP_001139412.1Re-query CCDS DB by Nucleotide ID:NM_001145940Re-query CCDS DB by Protein ID:NP_001139412Link to BLAST:NP_001139412.1
Original member Current member NCBI NM_002573.4 NP_002564.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002573.4Link to Protein Sequence:NP_002564.1Re-query CCDS DB by Nucleotide ID:NM_002573Re-query CCDS DB by Protein ID:NP_002564Link to BLAST:NP_002564.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139411.1 231 Q15102 231 100% 0 0
NP_001139412.1 231 Q15102 231 100% 0 0
NP_002564.1 231 Q15102 231 100% 0 0

Chromosomal Locations for CCDS 12602.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 42297078 42297365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42299970 42300092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42300171 42300287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42301950 42302039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42302232 42302309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGAGTGGAGAGGAGAACCCAGCCAGCAAGCCCACGCCGGTGCAGGACGTACAGGGCGACGGGCGCTGGA
TGTCCCTGCACCATCGGTTCGTGGCTGACAGCAAAGATAAGGAACCCGAAGTCGTCTTCATCGGGGACTC
CTTGGTCCAGCTCATGCACCAGTGCGAGATCTGGCGCGAGCTCTTCTCTCCTCTGCATGCACTTAACTTT
GGCATTGGTGGTGACGGCACACAGCATGTACTGTGGCGGCTGGAGAATGGGGAGCTGGAACACATCCGGC
CCAAGATTGTGGTGGTCTGGGTGGGCACCAACAACCACGGACACACAGCAGAGCAGGTGACTGGTGGCAT
CAAGGCCATTGTGCAACTGGTGAATGAGCGACAGCCCCAGGCCCGGGTTGTGGTGCTGGGCCTGCTTCCG
CGAGGCCAACATCCCAACCCACTTCGGGAGAAGAACCGACAGGTGAACGAGCTGGTACGGGCGGCACTGG
CTGGCCACCCTCGGGCCCACTTCCTAGATGCCGACCCTGGCTTTGTGCACTCAGATGGCACCATCAGCCA
TCATGACATGTATGATTACCTGCATCTGAGCCGCCTGGGCTACACACCTGTTTGCCGGGCTCTGCACTCC
CTGCTTCTGCGTCTGCTGGCCCAAGACCAGGGCCAAGGTGCTCCCCTGCTGGAGCCCGCACCCTAA

Translation (231 aa):
MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFSPLHALNF
GIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVQLVNERQPQARVVVLGLLP
RGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVHSDGTISHHDMYDYLHLSRLGYTPVCRALHS
LLLRLLAQDQGQGAPLLEPAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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