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Report for CCDS1266.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1266.1 Public Homo sapiens 1 MPC2 24 110 108 CCDS HistoryNCBI Gene:25874Re-query CCDS DB by CCDS ID:1266.1Re-query CCDS DB by GeneID:25874See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1266.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000271373.9 ENSP00000271373.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000271373.9Link to Ensembl Protein Viewer:ENSP00000271373.4Re-query CCDS DB by Nucleotide ID:ENST00000271373Re-query CCDS DB by Protein ID:ENSP00000271373
Original member Current member EBI ENST00000367846.8 ENSP00000356820.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367846.8Link to Ensembl Protein Viewer:ENSP00000356820.4Re-query CCDS DB by Nucleotide ID:ENST00000367846Re-query CCDS DB by Protein ID:ENSP00000356820
Original member Current member NCBI NM_001143674.4 NP_001137146.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001143674.4Link to Protein Sequence:NP_001137146.1Re-query CCDS DB by Nucleotide ID:NM_001143674Re-query CCDS DB by Protein ID:NP_001137146Link to BLAST:NP_001137146.1
Original member Current member NCBI NM_015415.3 NP_056230.1 Accepted alive Link to Nucleotide Sequence:NM_015415.3Link to Protein Sequence:NP_056230.1Re-query CCDS DB by Nucleotide ID:NM_015415Re-query CCDS DB by Protein ID:NP_056230Link to BLAST:NP_056230.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137146.1 127 O95563 127 100% 0 0
NP_056230.1 127 O95563 127 100% 0 0

Chromosomal Locations for CCDS 1266.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 167918323 167918359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167919979 167920090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167920547 167920631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167924497 167924537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167935733 167935841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGTCGGCCGCCGGTGCCCGAGGCCTGCGGGCCACCTACCACCGGCTCCTCGATAAAGTGGAGCTGATGC
TGCCCGAGAAATTGAGGCCGTTGTACAACCATCCAGCAGGTCCCAGAACAGTTTTCTTCTGGGCTCCAAT
TATGAAATGGGGGTTGGTGTGTGCTGGATTGGCTGATATGGCCAGACCTGCAGAAAAACTTAGCACAGCT
CAATCTGCTGTTTTGATGGCTACAGGGTTTATTTGGTCAAGATACTCACTTGTAATTATTCCAAAAAATT
GGAGTCTGTTTGCTGTTAATTTCTTTGTGGGGGCAGCAGGAGCCTCTCAGCTTTTTCGTATTTGGAGATA
TAACCAAGAACTAAAAGCTAAAGCACACAAATAA

Translation (127 aa):
MSAAGARGLRATYHRLLDKVELMLPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTA
QSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFRIWRYNQELKAKAHK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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