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Report for CCDS1280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1280.1 Public Homo sapiens 1 SLC19A2 24 110 108 CCDS HistoryNCBI Gene:10560Re-query CCDS DB by CCDS ID:1280.1Re-query CCDS DB by GeneID:10560See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1280.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000236137.10 ENSP00000236137.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000236137.10Link to Ensembl Protein Viewer:ENSP00000236137.5Re-query CCDS DB by Nucleotide ID:ENST00000236137Re-query CCDS DB by Protein ID:ENSP00000236137
Original member Current member NCBI NM_006996.3 NP_008927.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006996.3Link to Protein Sequence:NP_008927.1Re-query CCDS DB by Nucleotide ID:NM_006996Re-query CCDS DB by Protein ID:NP_008927Link to BLAST:NP_008927.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008927.1 497 O60779-1 497 100% 0 0

Chromosomal Locations for CCDS 1280.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 169465849 169465977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169468111 169468252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169468644 169468836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169469964 169470186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169477155 169477757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169485563 169485766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGGATGTGCCCGGCCCGGTGTCTCGGCGGGCGGCGGCGGCGGCGGCCACTGTGCTCCTGCGGACCGCTC
GGGTCCGTCGCGAATGCTGGTTCTTGCCGACCGCGCTGCTCTGCGCCTACGGCTTCTTCGCCAGCCTCAG
GCCGTCCGAGCCCTTCCTGACCCCGTACCTGCTGGGGCCGGACAAGAACCTGACCGAGAGGGAGGTCTTC
AATGAAATTTATCCAGTATGGACTTACTCTTACCTGGTGCTACTGTTTCCTGTGTTCCTTGCCACAGACT
ACCTCCGTTATAAACCTGTTGTTCTACTGCAGGGGCTCAGCCTTATTGTTACATGGTTTATGCTGCTCTA
TGCCCAGGGACTGCTGGCCATTCAATTTCTAGAATTTTTTTATGGCATCGCCACAGCCACTGAAATTGCC
TATTACTCTTATATCTACAGTGTGGTGGACCTGGGCATGTACCAGAAAGTCACAAGTTACTGTCGAAGTG
CCACTTTGGTGGGCTTTACAGTGGGCTCTGTCCTAGGGCAAATCCTTGTCTCAGTGGCAGGCTGGTCGCT
GTTCAGCCTGAATGTCATCTCTCTTACCTGTGTTTCAGTGGCTTTTGCTGTGGCCTGGTTTTTACCTATG
CCACAGAAGAGCCTCTTCTTTCACCACATTCCTTCTACCTGCCAGAGAGTGAATGGCATCAAGGTACAAA
ATGGTGGCATTGTTACTGACACCCCAGCTTCTAACCACCTTCCTGGCTGGGAGGACATTGAGTCAAAAAT
CCCTCTAAATATGGAGGAGCCTCCCGTGGAGGAACCGGAACCCAAGCCAGACCGTCTCCTTGTATTGAAA
GTACTATGGAATGATTTCCTGATGTGCTACTCCTCTCGCCCTCTTCTCTGCTGGTCTGTGTGGTGGGCCC
TCTCTACCTGTGGCTATTTTCAAGTTGTGAACTACACACAGGGCCTGTGGGAGAAAGTGATGCCTTCTCG
CTATGCTGCTATCTATAATGGTGGCGTGGAGGCCGTTTCAACCTTACTGGGTGCTGTTGCTGTGTTTGCA
GTTGGTTATATAAAAATATCCTGGTCAACTTGGGGAGAAATGACATTATCTCTCTTTTCTCTCCTGATTG
CTGCTGCAGTGTATATCATGGACACTGTGGGTAACATTTGGGTGTGCTATGCATCCTATGTTGTCTTCAG
AATCATCTACATGTTACTCATCACGATAGCAACTTTTCAAATTGCTGCAAACCTCAGCATGGAACGCTAT
GCCCTAGTATTTGGTGTAAATACCTTCATTGCCCTGGCACTGCAGACGCTGCTCACTCTAATTGTGGTAG
ATGCCAGTGGCCTTGGATTAGAAATTACCACTCAGTTTTTGATCTATGCCAGTTATTTTGCACTCATCGC
TGTGGTTTTCCTGGCCAGTGGTGCAGTCAGTGTTATGAAGAAATGTAGAAAGCTGGAAGATCCACAATCA
AGTTCTCAAGTAACCACTTCATAA

Translation (497 aa):
MDVPGPVSRRAAAAAATVLLRTARVRRECWFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNLTEREVF
NEIYPVWTYSYLVLLFPVFLATDYLRYKPVVLLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIA
YYSYIYSVVDLGMYQKVTSYCRSATLVGFTVGSVLGQILVSVAGWSLFSLNVISLTCVSVAFAVAWFLPM
PQKSLFFHHIPSTCQRVNGIKVQNGGIVTDTPASNHLPGWEDIESKIPLNMEEPPVEEPEPKPDRLLVLK
VLWNDFLMCYSSRPLLCWSVWWALSTCGYFQVVNYTQGLWEKVMPSRYAAIYNGGVEAVSTLLGAVAVFA
VGYIKISWSTWGEMTLSLFSLLIAAAVYIMDTVGNIWVCYASYVVFRIIYMLLITIATFQIAANLSMERY
ALVFGVNTFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLEDPQS
SSQVTTS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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