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Report for CCDS13104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13104.1 Public Homo sapiens 20 PLCB4 24 110 108 CCDS HistoryNCBI Gene:5332Re-query CCDS DB by CCDS ID:13104.1Re-query CCDS DB by GeneID:5332See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13104.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378501.3 ENSP00000367762.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378501.3Link to Ensembl Protein Viewer:ENSP00000367762.2Re-query CCDS DB by Nucleotide ID:ENST00000378501Re-query CCDS DB by Protein ID:ENSP00000367762
Original member Current member EBI ENST00000686313.1 ENSP00000508595.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000686313.1Link to Ensembl Protein Viewer:ENSP00000508595.1Re-query CCDS DB by Nucleotide ID:ENST00000686313Re-query CCDS DB by Protein ID:ENSP00000508595
Original member Current member EBI ENST00000686976.1 ENSP00000508600.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000686976.1Link to Ensembl Protein Viewer:ENSP00000508600.1Re-query CCDS DB by Nucleotide ID:ENST00000686976Re-query CCDS DB by Protein ID:ENSP00000508600
Original member Current member EBI ENST00000693752.1 ENSP00000508677.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000693752.1Link to Ensembl Protein Viewer:ENSP00000508677.1Re-query CCDS DB by Nucleotide ID:ENST00000693752Re-query CCDS DB by Protein ID:ENSP00000508677
Original member Current member EBI ENST00000686871.1 ENSP00000510118.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000686871.1Link to Ensembl Protein Viewer:ENSP00000510118.1Re-query CCDS DB by Nucleotide ID:ENST00000686871Re-query CCDS DB by Protein ID:ENSP00000510118
Original member Current member NCBI NM_000933.4 NP_000924.3 Accepted alive Link to Nucleotide Sequence:NM_000933.4Link to Protein Sequence:NP_000924.3Re-query CCDS DB by Nucleotide ID:NM_000933Re-query CCDS DB by Protein ID:NP_000924Link to BLAST:NP_000924.3
Original member Current member NCBI NM_001377134.2 NP_001364063.1 Accepted alive Link to Nucleotide Sequence:NM_001377134.2Link to Protein Sequence:NP_001364063.1Re-query CCDS DB by Nucleotide ID:NM_001377134Re-query CCDS DB by Protein ID:NP_001364063Link to BLAST:NP_001364063.1
Original member Current member NCBI NM_001377135.1 NP_001364064.1 Accepted alive Link to Nucleotide Sequence:NM_001377135.1Link to Protein Sequence:NP_001364064.1Re-query CCDS DB by Nucleotide ID:NM_001377135Re-query CCDS DB by Protein ID:NP_001364064Link to BLAST:NP_001364064.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000924.3 1194 Q15147-4 1194 100% 0 0
NP_001364063.1 1194 Q15147-4 1194 100% 0 0
NP_001364064.1 1194 Q15147-4 1194 100% 0 0

Chromosomal Locations for CCDS 13104.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 9307815 9307898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9337126 9337206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9338008 9338067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9338894 9339037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9362896 9362975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9365461 9365514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9371214 9371295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9372303 9372403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9373047 9373104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9380054 9380162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9384201 9384411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9387463 9387556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9389879 9389958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9390531 9390615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9393588 9393678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9395523 9395618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9401490 9401590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9407917 9408058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9408633 9408717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9409057 9409181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9411037 9411088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9419807 9419909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9421297 9421461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9423748 9423952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9435560 9435648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9437002 9437152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9443981 9444030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9444178 9444243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9453347 9453462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9457414 9457489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9459635 9459810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9468571 9468672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9472790 9472847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9473279 9473365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9476717 9476753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 9478921 9479009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3585 nt):
ATGGCCAAACCTTATGAATTTAACTGGCAGAAGGAAGTTCCCTCCTTTTTGCAAGAAGGAGCAGTTTTTG
AC
AGATACGAGGAGGAATCCTTTGTGTTTGAACCCAACTGCCTCTTCAAAGTGGATGAGTTTGGCTTCTT
T
CTGACATGGAGAAGTGAAGGCAAGGAAGGACAGGTGCTAGAATGCTCCCTCATCAACAGTATTCGGTCG
GGA
GCCATACCAAAGGATCCCAAAATCTTGGCTGCTCTTGAAGCTGTTGGAAAATCAGAAAATGATCTGG
AA
GGGCGGATAGTTTGTGTCTGCAGTGGCACAGATCTAGTGAACATTAGTTTTACCTACATGGTGGCTGA
A
AATCCAGAAGTAACTAAGCAATGGGTAGAAGGCCTGAGATCAATCATACACAACTTCAGGGCCAACAAC
GTC
AGTCCAATGACATGCCTCAAGAAACACTGGATGAAATTGGCATTTATGACCAACACAAATGGTAAAA
TT
CCAGTTAGGAGTATTACTAGAACATTTGCATCGGGAAAAACAGAAAAGGTGATCTTTCAAGCACTCAA
G
GAGTTAGGTCTTCCCAGTGGAAAGAATGATGAAATTGAGCCCACAGCATTTTCTTATGAAAAGTTCTAT
GAA
CTGACACAAAAGATTTGTCCTCGGACAGATATAGAAGATCTTTTCAAAAAAATCAATGGAGACAAAA
CT
GATTATTTAACGGTAGACCAATTAGTGAGCTTTCTAAATGAACATCAACGAGATCCTCGATTGAATGA
A
ATTTTATTTCCATTTTATGATGCCAAAAGGGCAATGCAGATCATTGAGATGTATGAACCTGATGAAGAT
TTG
AAGAAAAAAGGCCTTATATCAAGTGATGGGTTTTGCAGATATCTGATGTCAGATGAAAACGCCCCAG
TC
TTCCTAGATCGTTTAGAACTTTACCAAGAAATGGACCATCCTCTGGCTCACTACTTCATCAGTTCTTC
C
CATAACACTTATCTCACTGGCAGACAGTTCGGCGGGAAGTCTTCGGTAGAAATGTACAGACAGGTTCTC
CTG
GCTGGTTGCAGATGTGTTGAACTTGACTGCTGGGATGGAAAAGGTGAAGACCAAGAACCAATAATAA
CT
CATGGAAAAGCAATGTGTACAGATATCCTTTTTAAGGATGTAATTCAAGCCATCAAGGAAACTGCATT
T
GTCACATCAGAATATCCTGTAATTCTCTCCTTTGAAAATCACTGCAGCAAATATCAACAGTACAAGATG
TCC
AAATATTGCGAAGATCTATTTGGGGATCTCCTGTTGAAACAAGCACTTGAATCACATCCACTTGAAC
CA
GGCAGGGCTTTGCCATCCCCCAATGACCTCAAAAGAAAAATACTCATAAAAAACAAGCGGCTGAAACC
T
GAAGTTGAAAAAAAACAGCTGGAAGCTTTGAGAAGCATGATGGAAGCTGGAGAATCTGCCTCCCCAGCA
AAC
ATCTTAGAGGACGATAATGAAGAGGAGATCGAAAGTGCTGACCAAGAGGAGGAAGCTCACCCCGAAT
TC
AAATTTGGAAATGAACTTTCTGCTGATGACTTGGGTCACAAGGAAGCTGTTGCAAATAGCGTCAAGAA
G
GGCCTGGTCACTGTAGAAGATGAGCAGGCGTGGATGGCATCTTATAAATATGTAGGTGCTACCACTAAT
ATC
CATCCATATTTGTCCACAATGATCAACTACGCCCAGCCTGTAAAGTTTCAAGGTTTCCATGTGGCAG
AA
GAACGCAATATTCATTATAACATGTCTTCTTTTAATGAATCAGTCGGTCTTGGCTACTTGAAGACACA
T
GCAATTGAATTTGTCAATTATAACAAACGGCAAATGAGTCGCATTTACCCCAAGGGAGGCCGAGTCGAT
TCC
AGTAATTACATGCCTCAGATTTTCTGGAACGCTGGCTGCCAGATGGTTTCACTGAACTATCAAACCC
CA
GATTTAGCGATGCAATTGAATCAGGGAAAATTTGAGTATAATGGATCGTGCGGGTACCTTCTCAAACC
A
GATTTCATGAGGCGGCCTGATCGAACATTTGACCCCTTCTCTGAAACTCCTGTTGATGGTGTTATTGCA
GCC
ACTTGCTCAGTGCAGGTTATATCAGGTCAATTCTTATCAGATAAGAAAATTGGCACCTACGTAGAGG
TG
GATATGTATGGGTTGCCCACTGACACCATACGTAAGGAATTCCGAACTCGCATGGTTATGAATAATGG
A
CTCAATCCAGTTTACAATGAAGAGTCATTTGTATTTCGGAAGGTGATCCTGCCGGACCTGGCTGTCTTG
AGA
ATAGCTGTGTATGATGATAACAACAAGCTGATTGGCCAGAGGATCCTCCCGCTTGATGGCCTCCAAG
CC
GGATATCGACACATTTCCCTTCGAAATGAGGGAAATAAACCATTATCACTACCAACAATTTTCTGCAA
T
ATTGTTCTTAAAACATATGTGCCTGATGGATTTGGAGATATCGTGGATGCTTTATCAGATCCAAAGAAA
TTT
CTCTCAATTACAGAAAAGAGAGCAGACCAAATGAGAGCTATGGGCATTGAAACTAGTGACATAGCCG
AC
GTGCCCAGTGACACTTCCAAAAATGACAAGAAAGGAAAGGCCAACACCGCCAAAGCAAATGTGACCCC
T
CAGAGTAGCTCTGAGCTCAGACCAACCACCACGGCTGCCCTGGCCTCTGGTGTGGAAGCCAAGAAAGGT
ATT
GAACTTATCCCTCAAGTAAGGATAGAAGACTTAAAGCAGATGAAGGCTTACTTGAAGCATTTAAAGA
AA
CAGCAGAAGGAGCTAAATTCTTTAAAGAAGAAACATGCAAAGGAACACAGTACCATGCAGAAGTTACA
C
TGCACGCAAGTTGACAAAATTGTGGCACAGTATGACAAAGAGAAGTCGACTCATGAGAAAATCCTAGAG
AAG
GCAATGAAGAAGAAGGGGGGAAGTAATTGTCTCGAAATGAAAAAAGAAACAGAAATCAAAATTCAGA
CG
CTGACATCAGATCACAAATCTAAGGTCAAAGAGATTGTAGCACAGCACACAAAGGAATGGTCAGAAAT
G
ATCAATACCCACAGTGCTGAGGAGCAAGAAATCCGAGACCTGCACCTCAGCCAGCAGTGTGAGCTGCTG
AAA
AAGCTACTCATCAATGCCCACGAGCAGCAAACCCAGCAGCTGAAACTGTCCCATGACAGGGAAAGCA
AG
GAAATGCGAGCACACCAGGCTAAGATTTCTATGGAAAATAGCAAAGCCATCAGCCAAGATAAATCTAT
C
AAGAATAAAGCAGAACGGGAAAGGCGAGTCAGGGAGTTAAACAGCAGCAACACTAAAAAGTTTCTGGAA
GAA
AGAAAGAGACTTGCCATGAAGCAGTCCAAAGAAATGGATCAGTTGAAAAAAGTCCAGCTTGAACATC
TA
GAATTCCTAGAGAAACAGAATGAGCAGCTTTTGAAATCCTGTCATGCAGTGTCCCAAACGCAAGGCGA
A
GGAGATGCAGCAGATGGTGAAATTGGAAGCCGAGATGGACCGCAGACCAGCAACAGTAGTATGAAACTC
CAA
AATGCAAACTGA


Translation (1194 aa):
MAKPYEFNWQKEVPSFLQEGAVFDRYEEESFVFEPNCLFKVDEFGFFLTWRSEGKEGQVLECSLINSIRS
G
AIPK
DPKILAALEAVGKSENDLEGRIVCVCSGTDLVNISFTYMVAENPEVTKQWVEGLRSIIHNFRANN
V
SPMTCLKK
HWMKLAFMTNTNGKIPVRSITRTFASGKTEKVIFQALKELGLPSGKNDEIEPTAFSYEKFY
E
LTQKICPRTDIEDLFKK
INGDKTDYLTVDQLVSFLNEHQRDPRLNEILFPFYDAKRAMQIIEMYEPDED
L
KKK
GLISSDGFCRYLMSDENAPVFLDRLELYQEMDHPLAHYFISSSHNTYLTGRQFGGKSSVEMYRQVL
L
AGC
RCVELDCWDGKGEDQEPIITHGKAMCTDILFKDVIQAIKETAFVTSEYPVILSFENHCSKYQQYKM
S
KYCEDLFGDLLLKQALESHP
LEPGRALPSPNDLKRKILIKNKRLKPEVEKKQLEALRSMMEAGESASPA
N
ILEDDNEEEIES
ADQEEEAHPEFKFGNELSADDLGHKEAVANSVKKGLVTVEDEQAWMASYKYVGATTN
I
HPYLSTMINYAQPVKFQGFHVAE
ERNIHYNMSSFNESVGLGYLKTHAIEFVNYNKRQMSRIYPKGGRVD
S
SNYMPQIFWNAGCQMVSLNYQTP
DLAMQLNQGKFEYNGSCGYLLKPDFMRRPDRTFDPFSETPVDGVIA
A
TCSVQ
VISGQFLSDKKIGTYVEVDMYGLPTDTIRKEFRTRMVMNNGLNPVYNEESFVFRKVILPDLAVL
R
IAVYDDNNKLIGQRILPLDGLQAGYRHISLRNEGNKPLSLPTIFCNIVLKTYVPDGFG
DIVDALSDPKK
F
LSITEKRADQMRAMGIET
SDIADVPSDTSKNDKKGKANTAKANVTPQSSSELRPTTTAALASGVEAKKG
I
ELIPQVRIEDLKQMK
AYLKHLKKQQKELNSLKKKHAKEHSTMQKLHCTQVDKIVAQYDKEKSTHEKILE
K
AMKKK
GGSNCLEMKKETEIKIQTLTSDHKSKVKEIVAQHTKEWSEMINTHSAEEQEIRDLHLSQQCELL
K
KLLINAHEQQTQQLKLSHD
RESKEMRAHQAKISMENSKAISQDKSIKNKAERERRVRELNSSNTKKFLE
E
RKR
LAMKQSKEMDQLKKVQLEHLEFLEKQNEQLLKSCHAVSQTQGEGDAADGEIGSRDGPQTSNSSMKL
Q
NAN




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser