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Report for CCDS13689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13689.1 Public Homo sapiens 21 SLC37A1 24 110 108 CCDS HistoryNCBI Gene:54020Re-query CCDS DB by CCDS ID:13689.1Re-query CCDS DB by GeneID:54020See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13689.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000352133.3 ENSP00000344648.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000352133.3Link to Ensembl Protein Viewer:ENSP00000344648.2Re-query CCDS DB by Nucleotide ID:ENST00000352133Re-query CCDS DB by Protein ID:ENSP00000344648
Original member Current member EBI ENST00000398341.7 ENSP00000381383.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398341.7Link to Ensembl Protein Viewer:ENSP00000381383.3Re-query CCDS DB by Nucleotide ID:ENST00000398341Re-query CCDS DB by Protein ID:ENSP00000381383
Original member Current member NCBI NM_001320537.2 NP_001307466.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001320537.2Link to Protein Sequence:NP_001307466.1Re-query CCDS DB by Nucleotide ID:NM_001320537Re-query CCDS DB by Protein ID:NP_001307466Link to BLAST:NP_001307466.1
Original member Current member NCBI NM_018964.4 NP_061837.3 Accepted alive Link to Nucleotide Sequence:NM_018964.4Link to Protein Sequence:NP_061837.3Re-query CCDS DB by Nucleotide ID:NM_018964Re-query CCDS DB by Protein ID:NP_061837Link to BLAST:NP_061837.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307466.1 533 P57057 533 100% 0 0
NP_061837.3 533 P57057 533 100% 0 0

Chromosomal Locations for CCDS 13689.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 42518455 42518510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42525776 42525857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42534698 42534830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42535472 42535550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42539512 42539647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42542404 42542480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42543436 42543602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42547103 42547140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42554062 42554142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42558958 42559089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42562078 42562168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42563815 42563877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42564708 42564793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42565827 42565875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42566985 42567058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42568360 42568438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42574818 42574915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42579736 42579800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 42580345 42580360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGGCTCGACTCCCCGCTGGCATTCGCTTCATCATCTCATTCTCCAGGGATCAGTGGTACAGAGCCTTCA
TTTTTATTTTGACATTTCTGCTGTATGCAAGTTTTCACTTATCTCGAAAGCCTATCAGCATAGTTAAGGG
TGAGCTCCACAAGTACTGCACTGCTTGGGATGAAGCTGACGTCAGGTTCAGCAGCCAGAACAGGAAGTCT
GGGTCCGCTGCCCCCCACCAGCTCCCTGACAATGAGACCGACTGTGGCTGGGCACCGTTTGATAAGAACA
ACTATCAGCAGCTGCTTGGGGCCCTGGACTACTCCTTCCTGTGCGCCTATGCCGTGGGGATGTACCTCAG
TGGCATCATTGGGGAGCGCCTGCCGATTAGGTATTACCTAACTTTCGGGATGCTCGCCAGCGGAGCCTTC
ACCGCCCTGTTCGGCTTAGGGTATTTCTACAACATCCACAGTTTCGGATTCTACGTGGTAACTCAGGTCA
TCAACGGGCTGGTGCAGACCACCGGCTGGCCCAGCGTCGTCACCTGCCTCGGCAACTGGTTTGGAAAAGG
AAGGAGAGGTTTGATTATGGGGGTCTGGAACTCCCACACCTCCGTGGGCAACATCTTGGGGTCATTGATC
GCTGGCTACTGGGTGTCCACATGCTGGGGCCTGTCCTTCGTCGTGCCTGGAGCCATCGTGGCAGCCATGG
GGATAGTGTGCTTTCTCTTCCTCATTGAACATCCGAACGACGTCAGGTGCTCCTCCACCCTGGTGACGCA
CTCAAAAGGCTATGAGAATGGTACAAACAGATTGAGACTCCAGAAGCAAATCTTGAAGAGCGAAAAGAAC
AAGCCTCTGGACCCAGAGATGCAGTGCCTGCTGCTCTCAGATGGGAAGGGCTCCATCCACCCGAACCACG
TCGTCATTCTCCCCGGGGACGGTGGGAGTGGCACGGCCGCCATCAGCTTCACAGGGGCCTTGAAAATTCC
AGGCGTGATAGAGTTCTCACTGTGTCTGCTGTTTGCCAAGCTGGTCAGCTATACTTTCCTCTTCTGGCTG
CCCCTGTACATCACGAATGTGGATCACCTTGATGCCAAAAAGGCGGGGGAGCTCTCCACCCTGTTTGACG
TGGGCGGAATCTTTGGTGGGATCCTGGCAGGTGTGATCTCAGACCGACTGGAGAAAAGGGCCTCCACCTG
CGGCCTGATGCTGCTGCTCGCGGCCCCCACGCTCTACATCTTCTCCACCGTCAGCAAGATGGGGCTTGAG
GCCACCATCGCCATGCTGCTGCTCAGCGGAGCCCTGGTCAGTGGGCCCTACACACTCATCACCACCGCCG
TCTCCGCCGACCTGGGGACTCATAAAAGTCTGAAAGGCAACGCGCACGCCCTCTCCACCGTGACGGCCAT
CATTGACGGGACGGGCTCTGTAGGAGCAGCCCTGGGCCCCCTGCTGGCTGGGCTCCTCTCCCCGTCCGGC
TGGAGCAATGTGTTTTACATGCTGATGTTTGCAGATGCCTGTGCCTTACTGTTCCTGATCCGCCTCATAC
ACAAGGAGCTGAGCTGCCCAGGGTCAGCTACGGGGGACCAAGTTCCATTTAAGGAACAGTGA

Translation (533 aa):
MARLPAGIRFIISFSRDQWYRAFIFILTFLLYASFHLSRKPISIVKGELHKYCTAWDEADVRFSSQNRKS
GSAAPHQLPDNETDCGWAPFDKNNYQQLLGALDYSFLCAYAVGMYLSGIIGERLPIRYYLTFGMLASGAF
TALFGLGYFYNIHSFGFYVVTQVINGLVQTTGWPSVVTCLGNWFGKGRRGLIMGVWNSHTSVGNILGSLI
AGYWVSTCWGLSFVVPGAIVAAMGIVCFLFLIEHPNDVRCSSTLVTHSKGYENGTNRLRLQKQILKSEKN
KPLDPEMQCLLLSDGKGSIHPNHVVILPGDGGSGTAAISFTGALKIPGVIEFSLCLLFAKLVSYTFLFWL
PLYITNVDHLDAKKAGELSTLFDVGGIFGGILAGVISDRLEKRASTCGLMLLLAAPTLYIFSTVSKMGLE
ATIAMLLLSGALVSGPYTLITTAVSADLGTHKSLKGNAHALSTVTAIIDGTGSVGAALGPLLAGLLSPSG
WSNVFYMLMFADACALLFLIRLIHKELSCPGSATGDQVPFKEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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