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Report for CCDS1372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1372.1 Public Homo sapiens 1 PLA2G4A 24 110 108 CCDS HistoryNCBI Gene:5321Re-query CCDS DB by CCDS ID:1372.1Re-query CCDS DB by GeneID:5321See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1372.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367466.4 ENSP00000356436.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367466.4Link to Ensembl Protein Viewer:ENSP00000356436.3Re-query CCDS DB by Nucleotide ID:ENST00000367466Re-query CCDS DB by Protein ID:ENSP00000356436
Original member Current member NCBI NM_024420.3 NP_077734.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024420.3Link to Protein Sequence:NP_077734.2Re-query CCDS DB by Nucleotide ID:NM_024420Re-query CCDS DB by Protein ID:NP_077734Link to BLAST:NP_077734.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077734.2 749 P47712 749 100% 0 0

Chromosomal Locations for CCDS 1372.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 186854355 186854387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186870435 186870516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186893011 186893159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186894098 186894211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186906965 186907002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186911248 186911389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186932763 186932899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186939008 186939230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186939980 186940094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186946637 186946774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186946869 186946961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186950657 186950728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186956102 186956344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186965409 186965593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186977593 186977788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186979315 186979472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 186988377 186988508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2250 nt):
ATGTCATTTATAGATCCTTACCAGCACATTATAGTGGAGCACCAGTATTCCCACAAGTTTACGGTAGTGG
TG
TTACGTGCCACCAAAGTGACAAAGGGGGCCTTTGGTGACATGCTTGATACTCCAGATCCCTATGTGGA
A
CTTTTTATCTCTACAACCCCTGACAGCAGGAAGAGAACAAGACATTTCAATAATGACATAAACCCTGTG
TGG
AATGAGACCTTTGAATTTATTTTGGATCCTAATCAGGAAAATGTTTTGGAGATTACGTTAATGGATG
CC
AATTATGTCATGGATGAAACTCTAGGGACAGCAACATTTACTGTATCTTCTATGAAGGTGGGAGAAAA
G
AAAGAAGTTCCTTTTATTTTCAACCAAGTCACTGAAATGGTTCTAGAAATGTCTCTTGAAGTTTGCTCA
TGC
CCAGACCTACGATTTAGTATGGCTCTGTGTGATCAGGAGAAGACTTTCAGACAACAGAGAAAAGAAC
AC
ATAAGGGAGAGCATGAAGAAACTCTTGGGTCCAAAGAATAGTGAAGGATTGCATTCTGCACGTGATGT
G
CCTGTGGTAGCCATATTGGGTTCAGGTGGGGGTTTCCGAGCCATGGTGGGATTCTCTGGTGTGATGAAG
GCA
TTATACGAATCAGGAATTCTGGATTGTGCTACCTACGTTGCTGGTCTTTCTGGCTCCACCTGGTATA
TG
TCAACCTTGTATTCTCACCCTGATTTTCCAGAGAAAGGGCCAGAGGAGATTAATGAAGAACTAATGAA
A
AATGTTAGCCACAATCCCCTTTTACTTCTCACACCACAGAAAGTTAAAAGATATGTTGAGTCTTTATGG
AAG
AAGAAAAGCTCTGGACAACCTGTCACCTTTACTGATATCTTTGGGATGTTAATAGGAGAAACACTAA
TT
CATAATAGAATGAATACTACTCTGAGCAGTTTGAAGGAAAAAGTTAATACTGCACAATGCCCTTTACC
T
CTTTTCACCTGTCTTCATGTCAAACCTGACGTTTCAGAGCTGATGTTTGCAGATTGGGTTGAATTTAGT
CCA
TACGAAATTGGCATGGCTAAATATGGTACTTTTATGGCTCCCGACTTATTTGGAAGCAAATTTTTTA
TG
GGAACAGTCGTTAAGAAGTATGAAGAAAACCCCTTGCATTTCTTAATGGGTGTCTGGGGCAGTGCCTT
T
TCCATATTGTTCAACAGAGTTTTGGGCGTTTCTGGTTCACAAAGCAGAGGCTCCACAATGGAGGAAGAA
TTA
GAAAATATTACCACAAAGCATATTGTGAGTAATGATAGCTCGGACAGTGATGATGAATCACACGAAC
CC
AAAGGCACTGAAAATGAAGATGCTGGAAGTGACTATCAAAGTGATAATCAAGCAAGTTGGATTCATCG
T
ATGATAATGGCCTTGGTGAGTGATTCAGCTTTATTCAATACCAGAGAAGGACGTGCTGGGAAGGTACAC
AAC
TTCATGCTGGGCTTGAATCTCAATACATCTTATCCACTGTCTCCTTTGAGTGACTTTGCCACACAGG
AC
TCCTTTGATGATGATGAACTGGATGCAGCTGTAGCAGATCCTGATGAATTTGAGCGAATATATGAGCC
T
CTGGATGTCAAAAGTAAAAAGATTCATGTAGTGGACAGTGGGCTCACATTTAACCTGCCGTATCCCTTG
ATA
CTGAGACCTCAGAGAGGGGTTGATCTCATAATCTCCTTTGACTTTTCTGCAAGGCCAAGTGACTCTA
GT
CCTCCGTTCAAGGAACTTCTACTTGCAGAAAAGTGGGCTAAAATGAACAAGCTCCCCTTTCCAAAGAT
T
GATCCTTATGTGTTTGATCGGGAAGGGCTGAAGGAGTGCTATGTCTTTAAACCCAAGAATCCTGATATG
GAG
AAAGATTGCCCAACCATCATCCACTTTGTTCTGGCCAACATCAACTTCAGAAAGTACAGGGCTCCAG
GT
GTTCCAAGGGAAACTGAGGAAGAGAAAGAAATCGCTGACTTTGATATTTTTGATGACCCAGAATCACC
A
TTTTCAACCTTCAATTTTCAATATCCAAATCAAGCATTCAAAAGACTACATGATCTTATGCACTTCAAT
ACT
CTGAACAACATTGATGTGATAAAAGAAGCCATGGTTGAAAGCATTGAATATAGAAGACAGAATCCAT
CT
CGTTGCTCTGTTTCCCTTAGTAATGTTGAGGCAAGAAGATTTTTCAACAAGGAGTTTCTAAGTAAACC
C
AAAGCATAG


Translation (749 aa):
MSFIDPYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPV
W
NETFEFILDPNQENVLE
ITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVCS
C
PDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPKNSEGLHSARD
VPVVAILGSGGGFRAMVGFSGVMK
A
LYESGILDCATYVAGLSGST
WYMSTLYSHPDFPEKGPEEINEELMKNVSHNPLLLLTPQKVKRYVESLW
K
KKSSGQPVTFTDIFGMLIGETLIHN
RMNTTLSSLKEKVNTAQCPLPLFTCLHVKPDVSELMFADWVEFS
P
YEIGMAKYGTFMAPDLFGSKFFMGTVVKKYEENPLHFLM
GVWGSAFSILFNRVLGVSGSQSRGSTMEEE
L
ENITTKHIVSNDSSDSDDESHEPKGTENEDAGSDYQSDNQASWIHRMIMALVSDSALFNTREGRAGKVH
N
FMLGLNLNTSYPLSPLSDFATQDSFDDDELDAAVA
DPDEFERIYEPLDVKSKKIHVVDSGLTFNLPYPL
I
LRPQRGVDLIISFDFSARPSDSSPPFK
ELLLAEKWAKMNKLPFPKIDPYVFDREGLKECYVFKPKNPDM
E
KDCPTIIHFVLANINFRKYRAP
GVPRETEEEKEIADFDIFDDPESPFSTFNFQYPNQAFKRLHDLMHFN
T
LNNID
VIKEAMVESIEYRRQNPSRCSVSLSNVEARRFFNKEFLSKPKA



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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