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Report for CCDS14041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14041.1 Public Homo sapiens 22 A4GALT 24 110 108 CCDS HistoryNCBI Gene:53947Re-query CCDS DB by CCDS ID:14041.1Re-query CCDS DB by GeneID:53947See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14041.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000249005.3 ENSP00000249005.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000249005.3Link to Ensembl Protein Viewer:ENSP00000249005.2Re-query CCDS DB by Nucleotide ID:ENST00000249005Re-query CCDS DB by Protein ID:ENSP00000249005
Original member Current member EBI ENST00000381278.4 ENSP00000370678.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381278.4Link to Ensembl Protein Viewer:ENSP00000370678.3Re-query CCDS DB by Nucleotide ID:ENST00000381278Re-query CCDS DB by Protein ID:ENSP00000370678
Original member Current member EBI ENST00000401850.5 ENSP00000384794.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000401850.5Link to Ensembl Protein Viewer:ENSP00000384794.1Re-query CCDS DB by Nucleotide ID:ENST00000401850Re-query CCDS DB by Protein ID:ENSP00000384794
Original member Current member EBI ENST00000642412.2 ENSP00000494127.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000642412.2Link to Ensembl Protein Viewer:ENSP00000494127.1Re-query CCDS DB by Nucleotide ID:ENST00000642412Re-query CCDS DB by Protein ID:ENSP00000494127
Original member Current member NCBI NM_001318038.3 NP_001304967.1 Accepted alive Link to Nucleotide Sequence:NM_001318038.3Link to Protein Sequence:NP_001304967.1Re-query CCDS DB by Nucleotide ID:NM_001318038Re-query CCDS DB by Protein ID:NP_001304967Link to BLAST:NP_001304967.1
Original member Current member NCBI NM_017436.7 NP_059132.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017436.7Link to Protein Sequence:NP_059132.1Re-query CCDS DB by Nucleotide ID:NM_017436Re-query CCDS DB by Protein ID:NP_059132Link to BLAST:NP_059132.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304967.1 353 Q9NPC4 353 100% 0 0
NP_059132.1 353 Q9NPC4 353 100% 0 0

Chromosomal Locations for CCDS 14041.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 42692890 42693951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGTCCAAGCCCCCCGACCTCCTGCTGCGGCTGCTCCGGGGCGCCCCAAGGCAGCGGGTCTGCACCCTGT
TCATCATCGGCTTCAAGTTCACGTTTTTCGTCTCCATCATGATCTACTGGCACGTTGTGGGAGAGCCCAA
GGAGAAAGGGCAGCTCTATAACCTGCCAGCAGAGATCCCCTGCCCCACCTTGACACCCCCCACCCCACCC
TCCCACGGCCCCACTCCAGGCAACATCTTCTTCCTGGAGACTTCAGACCGGACCAACCCCAACTTCCTGT
TCATGTGCTCGGTGGAGTCGGCCGCCAGAACTCACCCCGAATCCCACGTGCTGGTCCTGATGAAAGGGCT
TCCGGGTGGCAACGCCTCTCTGCCCCGGCACCTGGGCATCTCACTTCTGAGCTGCTTCCCGAATGTCCAG
ATGCTCCCGCTGGACCTGCGGGAGCTGTTCCGGGACACACCCCTGGCCGACTGGTACGCGGCCGTGCAGG
GGCGCTGGGAGCCCTACCTGCTGCCCGTGCTCTCCGACGCCTCCAGGATCGCACTCATGTGGAAGTTCGG
CGGCATCTACCTGGACACGGACTTCATTGTTCTCAAGAACCTGCGGAACCTGACCAACGTGCTGGGCACC
CAGTCCCGCTACGTCCTCAACGGCGCGTTCCTGGCCTTCGAGCGCCGGCACGAGTTCATGGCGCTGTGCA
TGCGGGACTTCGTGGACCACTACAACGGCTGGATCTGGGGTCACCAGGGCCCGCAGCTGCTCACGCGGGT
CTTCAAGAAGTGGTGTTCCATCCGCAGCCTGGCCGAGAGCCGCGCCTGCCGCGGCGTCACCACCCTGCCC
CCTGAGGCCTTCTACCCCATCCCCTGGCAGGACTGGAAGAAGTACTTTGAGGACATCAACCCCGAGGAGC
TGCCGCGGCTGCTCAGTGCCACCTATGCTGTCCACGTGTGGAACAAGAAGAGCCAGGGCACGCGGTTCGA
GGCCACGTCCAGGGCACTGCTGGCCCAGCTGCATGCCCGCTACTGCCCCACGACGCACGAGGCCATGAAA
ATGTACTTGTGA

Translation (353 aa):
MSKPPDLLLRLLRGAPRQRVCTLFIIGFKFTFFVSIMIYWHVVGEPKEKGQLYNLPAEIPCPTLTPPTPP
SHGPTPGNIFFLETSDRTNPNFLFMCSVESAARTHPESHVLVLMKGLPGGNASLPRHLGISLLSCFPNVQ
MLPLDLRELFRDTPLADWYAAVQGRWEPYLLPVLSDASRIALMWKFGGIYLDTDFIVLKNLRNLTNVLGT
QSRYVLNGAFLAFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFKKWCSIRSLAESRACRGVTTLP
PEAFYPIPWQDWKKYFEDINPEELPRLLSATYAVHVWNKKSQGTRFEATSRALLAQLHARYCPTTHEAMK
MYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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