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Report for CCDS14404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14404.1 Public Homo sapiens X SLC7A3 24 110 108 CCDS HistoryNCBI Gene:84889Re-query CCDS DB by CCDS ID:14404.1Re-query CCDS DB by GeneID:84889See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14404.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298085.4 ENSP00000298085.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000298085.4Link to Ensembl Protein Viewer:ENSP00000298085.4Re-query CCDS DB by Nucleotide ID:ENST00000298085Re-query CCDS DB by Protein ID:ENSP00000298085
Original member Current member EBI ENST00000374299.8 ENSP00000363417.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374299.8Link to Ensembl Protein Viewer:ENSP00000363417.3Re-query CCDS DB by Nucleotide ID:ENST00000374299Re-query CCDS DB by Protein ID:ENSP00000363417
Original member Current member NCBI NM_001048164.3 NP_001041629.1 Accepted alive Link to Nucleotide Sequence:NM_001048164.3Link to Protein Sequence:NP_001041629.1Re-query CCDS DB by Nucleotide ID:NM_001048164Re-query CCDS DB by Protein ID:NP_001041629Link to BLAST:NP_001041629.1
Original member Current member NCBI NM_032803.6 NP_116192.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032803.6Link to Protein Sequence:NP_116192.4Re-query CCDS DB by Nucleotide ID:NM_032803Re-query CCDS DB by Protein ID:NP_116192Link to BLAST:NP_116192.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001041629.1 619 Q8WY07 619 100% 0 0
NP_116192.4 619 Q8WY07 619 100% 0 0

Chromosomal Locations for CCDS 14404.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 70925813 70925943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70926070 70926178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70926527 70926693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70926875 70927041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70927282 70927384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70927484 70927623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70927798 70928020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70928145 70928257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70928456 70928633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70928844 70929002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 70929628 70929997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1860 nt):
ATGCCGTGGCAAGCATTTCGCAGATTTGGTCAAAAGCTGGTACGCAGACGTACACTGGAGTCAGGCATGG
CT
GAGACTCGCCTTGCCAGATGCCTAAGCACCCTGGATTTAGTGGCCCTGGGTGTGGGCAGCACATTGGG
T
GCAGGCGTGTATGTCCTAGCTGGCGAGGTGGCCAAAGATAAAGCAGGGCCATCCATTGTGATCTGCTTT
TTG
GTGGCTGCCCTGTCTTCTGTGTTGGCTGGGCTGTGCTATGCGGAGTTTGGTGCCCGGGTTCCCCGTT
CT
GGTTCGGCATATCTCTACAGCTATGTCACTGTGGGTGAACTCTGGGCCTTCACCACTGGCTGGAACCT
C
ATCCTCTCCTATGTCATTGGTACAGCCAGTGTGGCCCGGGCCTGGAGCTCTGCTTTTGACAACCTGATT
GGG
AACCACATCTCTAAGACTCTGCAGGGGTCCATTGCACTGCACGTGCCCCATGTCCTTGCAGAATATC
CA
GATTTCTTTGCTTTGGGCCTCGTGTTGCTGCTCACTGGATTGTTGGCTCTCGGGGCTAGTGAGTCGGC
C
CTGGTTACCAAAGTGTTCACAGGCGTGAACCTTTTGGTTCTTGGGTTCGTCATGATCTCTGGCTTCGTT
AAG
GGGGACGTGCACAACTGGAAGCTCACAGAAGAGGACTACGAATTGGCCATGGCTGAACTCAATGACA
CC
TATAGCTTGGGTCCTCTGGGCTCTGGAGGATTTGTGCCTTTCGGCTTCGAGGGAATTCTCCGTGGAGC
A
GCGACCTGTTTCTATGCATTTGTTGGTTTCGACTGTATTGCTACCACTGGAGAAGAAGCCCAGAATCCC
CAG
CGTTCCATCCCGATGGGCATTGTGATCTCACTGTCTGTCTGCTTTTTGGCGTATTTTGCTGTCTCTT
CT
GCACTCACCCTGATGATGCCTTACTACCAGCTTCAGCCTGAGAGCCCTTTGCCTGAGGCATTTCTCTA
C
ATTGGATGGGCTCCTGCCCGCTATGTTGTGGCTGTTGGCTCCCTCTGTGCTCTTTCTACCAGCCTCCTG
GGC
TCCATGTTCCCCATGCCTCGGGTGATCTACGCGATGGCAGAGGATGGCCTCCTGTTCCGTGTACTTG
CT
CGGATCCACACCGGCACACGCACCCCAATCATAGCCACCGTGGTCTCTGGCATTATTGCAGCATTCAT
G
GCATTCCTCTTCAAACTCACTGATCTTGTGGACCTCATGTCAATTGGGACCCTGCTTGCTTACTCCCTG
GTG
TCGATTTGTGTTCTCATCCTCAGGTATCAACCTGATCAGGAGACAAAGACTGGGGAAGAAGTGGAGT
TG
CAGGAGGAGGCAATAACTACTGAATCAGAGAAGTTGACCCTATGGGGACTATTTTTCCCACTCAACTC
C
ATCCCCACTCCACTCTCTGGCCAAATTGTCTATGTTTGTTCCTCATTGCTTGCTGTCCTGCTGACTGCT
CTT
TGCCTGGTGCTGGCCCAGTGGTCAGTTCCATTGCTTTCTGGAGACCTGCTGTGGACTGCAGTGGTTG
TG
CTGCTCCTGCTGCTCATTATTGGGATCATTGTGGTCATCTGGAGACAGCCACAGAGTTCCACTCCCCT
T
CACTTTAAGGTGCCTGCTTTGCCTCTCCTCCCACTAATGAGCATCTTTGTGAATATTTACCTTATGATG
CAG
ATGACAGCTGGTACCTGGGCCCGATTTGGGGTCTGGATGCTGATTGGCTTTGCTATCTACTTCGGCT
AT
GGGATCCAGCACAGCCTGGAAGAGATTAAGAGTAACCAACCCTCACGCAAGTCTAGAGCCAAAACTGT
A
GACCTTGATCCCGGCACTCTCTATGTCCACTCAGTTTGA


Translation (619 aa):
MPWQAFRRFGQKLVRRRTLESGMAETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKDKAGPSIVICF
L
VAALSSVLAGLCYAEFGARVPRSGSAYLYSYVTVGELWAFTTGWNLILSYVI
GTASVARAWSSAFDNLI
G
NHISKTLQGSIALHVPHVLAEYPDFFALGLVLLLT
GLLALGASESALVTKVFTGVNLLVLGFVMISGFV
K
GDVHNWKLTEEDYELAMAELNDTY
SLGPLGSGGFVPFGFEGILRGAATCFYAFVGFDCIATTGEEAQNP
Q
RSIPMGIVISLSVCFLAYFAVSSALTLMMPYYQLQPESPLPEAFLYIGWAPARYVVAVGSLCALST
SLL
G
SMFPMPRVIYAMAEDGLLFRVLARIHTGTRTPIIATVVSGIIA
AFMAFLFKLTDLVDLMSIGTLLAYSL
V
SICVLIL
RYQPDQETKTGEEVELQEEAITTESEKLTLWGLFFPLNSIPTPLSGQIVYVCSSLLAVLLTA
L
CLVLAQWSVPLLSGDLLWTAVVVLLLLLIIGIIVVIWRQPQSSTPLHFK
VPALPLLPLMSIFVNIYLMM
Q
MTAGTWARFGVWMLI
GFAIYFGYGIQHSLEEIKSNQPSRKSRAKTVDLDPGTLYVHSV



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser