NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14570.1 Public Homo sapiens X SLC6A14 24 110 108 CCDS HistoryNCBI Gene:11254Re-query CCDS DB by CCDS ID:14570.1Re-query CCDS DB by GeneID:11254See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14570.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000598581.3 ENSP00000470801.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000598581.3Link to Ensembl Protein Viewer:ENSP00000470801.1Re-query CCDS DB by Nucleotide ID:ENST00000598581Re-query CCDS DB by Protein ID:ENSP00000470801
Original member Current member NCBI NM_007231.5 NP_009162.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007231.5Link to Protein Sequence:NP_009162.1Re-query CCDS DB by Nucleotide ID:NM_007231Re-query CCDS DB by Protein ID:NP_009162Link to BLAST:NP_009162.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_009162.1 642 Q9UN76 642 100% 0 0

Chromosomal Locations for CCDS 14570.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 116436710 116436757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 116437790 116437955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 116440966 116441097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 116442687 116442848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 116443643 116443790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 116444918 116445050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 116446741 116446881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 116451442 116451670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 116453017 116453142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 116454324 116454442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 116454977 116455076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 116455357 116455466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 116457609 116457776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 116458809 116458955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1929 nt):
ATGGACAAGTTGAAATGCCCGAGTTTCTTCAAGTGCAGGGAGAAGGAGAAAGTGTCGGCTTCATCAGAGA
AT
TTCCATGTTGGTGAAAATGATGAGAATCAGGACCGTGGTAACTGGTCCAAAAAATCGGATTATCTTCT
A
TCTATGATTGGATACGCAGTGGGATTAGGAAATGTGTGGAGATTTCCATATCTGACCTACAGCAATGGT
GGA
GGCGCCTTCTTGATACCTTATGCAATTATGTTAGCATTGGCTGGTTTACCTTTGTTCTTTCTGGAGT
GT
TCACTGGGACAATTTGCTAGCTTAGGTCCAGTTTCAGTTTGGAGGATTCTTCCATTGTTTCAAGGTGT
G
GGAATTACAATGGTCCTGATCTCCATTTTTGTGACAATCTATTACAATGTCATAATTGCCTATAGTCTT
TAC
TACATGTTTGCTTCTTTTCAAAGTGAACTACCATGGAAAAATTGTTCTTCGTGGTCAGATAAAAACT
GT
AGCAGATCACCAATAGTAACTCACTGTAATGTGAGTACAGTGAATAAAGGAATACAAGAGATCATCCA
A
ATGAATAAAAGCTGGGTAGACATCAACAATTTTACCTGCATCAACGGCAGTGAAATTTATCAGCCAGGG
CAG
CTTCCCAGTGAACAATATTGGAATAAAGTGGCGCTCCAACGGTCAAGTGGAATGAATGAGACTGGAG
TA
ATTGTTTGGTATTTAGCACTTTGTCTTCTTCTGGCTTGGCTCATAGTTGGAGCAGCACTATTTAAAGG
A
ATCAAATCGTCTGGCAAGGTGGTATATTTTACAGCTCTTTTCCCCTATGTGGTCCTACTCATCCTGTTA
GTA
CGAGGTGCAACTCTGGAGGGTGCTTCAAAAGGCATTTCATACTATATTGGAGCCCAGTCAAATTTTA
CA
AAACTTAAGGAAGCTGAGGTATGGAAAGATGCTGCCACTCAGATATTTTACTCCCTTTCAGTGGCTTG
G
GGTGGCTTAGTTGCTCTATCATCTTACAATAAGTTCAAAAACAACTGCTTCTCTGATGCCATTGTGGTT
TGT
TTGACAAACTGTCTCACTAGCGTGTTTGCTGGATTTGCTATTTTTTCTATATTGGGACACATGGCCC
AT
ATATCTGGAAAGGAAGTTTCTCAAGTTGTAAAATCAGGTTTTGATTTGGCATTCATTGCCTATCCAGA
G
GCTCTAGCCCAACTCCCAGGTGGTCCATTTTGGTCCATATTATTTTTTTTCATGCTTTTAACTTTGGGT
CTC
GATTCTCAGTTTGCTTCGATTGAAACGATCACAACAACAATTCAAGATTTATTTCCCAAAGTGATGA
AG
AAAATGAGGGTTCCCATAACTTTGGGCTGCTGCTTGGTTTTGTTTCTCCTTGGTCTCGTCTGTGTGAC
T
CAGGCTGGAATTTACTGGGTTCATCTGATTGACCACTTCTGTGCTGGATGGGGCATTTTAATTGCAGCT
ATA
CTGGAGCTAGTTGGAATCATCTGGATTTATGGAGGGAACAGATTCATTGAGGATACAGAAATGATGA
TT
GGAGCAAAGAGGTGGATATTCTGGCTATGGTGGAGAGCTTGCTGGTTTGTAATTACGCCTATCCTTTT
G
ATTGCAATATTTATCTGGTCATTGGTGCAATTTCATAGACCTAATTATGGCGCAATTCCATACCCTGAC
TGG
GGAGTTGCTTTAGGCTGGTGTATGATTGTTTTCTGCATTATTTGGATTCCAATTATGGCTATCATAA
AA
ATAATTCAGGCTAAAGGAAACATCTTTCAACGCCTTATAAGTTGCTGCAGACCAGCTTCTAACTGGGG
T
CCATACCTGGAACAACATCGTGGGGAAAGATATAAAGACATGGTAGATCCTAAAAAAGAGGCTGACCAT
GAA
ATACCTACTGTTAGTGGCAGCAGAAAACCGGAATGA


Translation (642 aa):
MDKLKCPSFFKCREKEKVSASSENFHVGENDENQDRGNWSKKSDYLLSMIGYAVGLGNVWRFPYLTYSNG
G
GAFLIPYAIMLALAGLPLFFLECSLGQFASLGPVSVWRILPLFQGVGITMVLISIFVTIYYNVIIAYSL
Y
YMFASFQSELPWKNCSSWSDKNCSRSPI
VTHCNVSTVNKGIQEIIQMNKSWVDINNFTCINGSEIYQPG
Q
LPSEQYW
NKVALQRSSGMNETGVIVWYLALCLLLAWLIVGAALFKGIKSSGKVVYFTALFPYVVLLILL
V
RGATLEGASKGISYYIGAQSNFTKLKEAE
VWKDAATQIFYSLSVAWGGLVALSSYNKFKNNCFSDAIVV
C
LTNCLTSVFAGFAIFSILGHMAHISGKEVSQVVKS
GFDLAFIAYPEALAQLPGGPFWSILFFFMLLTLG
L
DSQFASI
ETITTTIQDLFPKVMKKMRVPITLGCCLVLFLLGLVCVTQAGIYWVHLIDHFCAGWGILIAA
I
LELVGIIWIY
GGNRFIEDTEMMIGAKRWIFWLWWRACWFVITPILLIAIFIWSLVQFHRPNYGAIPYPD
W
GVALGWCMIVFCIIWIPIMAIIKIIQAKGNIFQ
RLISCCRPASNWGPYLEQHRGERYKDMVDPKKEADH
E
IPTVSGSRKPE




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser