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Report for CCDS1489.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1489.1 Public Homo sapiens 1 HSD11B1 24 110 108 CCDS HistoryNCBI Gene:3290Re-query CCDS DB by CCDS ID:1489.1Re-query CCDS DB by GeneID:3290See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1489.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367027.5 ENSP00000355994.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367027.5Link to Ensembl Protein Viewer:ENSP00000355994.3Re-query CCDS DB by Nucleotide ID:ENST00000367027Re-query CCDS DB by Protein ID:ENSP00000355994
Original member Current member EBI ENST00000367028.6 ENSP00000355995.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367028.6Link to Ensembl Protein Viewer:ENSP00000355995.1Re-query CCDS DB by Nucleotide ID:ENST00000367028Re-query CCDS DB by Protein ID:ENSP00000355995
Original member Current member NCBI NM_001206741.2 NP_001193670.1 Accepted alive Link to Nucleotide Sequence:NM_001206741.2Link to Protein Sequence:NP_001193670.1Re-query CCDS DB by Nucleotide ID:NM_001206741Re-query CCDS DB by Protein ID:NP_001193670Link to BLAST:NP_001193670.1
Original member Current member NCBI NM_005525.4 NP_005516.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005525.4Link to Protein Sequence:NP_005516.1Re-query CCDS DB by Nucleotide ID:NM_005525Re-query CCDS DB by Protein ID:NP_005516Link to BLAST:NP_005516.1
Original member Current member NCBI NM_181755.3 NP_861420.1 Accepted alive Link to Nucleotide Sequence:NM_181755.3Link to Protein Sequence:NP_861420.1Re-query CCDS DB by Nucleotide ID:NM_181755Re-query CCDS DB by Protein ID:NP_861420Link to BLAST:NP_861420.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193670.1 292 P28845 292 100% 0 0
NP_005516.1 292 P28845 292 100% 0 0
NP_861420.1 292 P28845 292 100% 0 0

Chromosomal Locations for CCDS 1489.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 209704943 209705030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209705811 209705941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209706709 209706820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209706943 209707128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209732436 209732579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209734304 209734521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGCTTTTATGAAAAAATATCTCCTCCCCATTCTGGGGCTCTTCATGGCCTACTACTACTATTCTGCAA
ACGAGGAATTCAGACCAGAGATGCTCCAAGGAAAGAAAGTGATTGTCACAGGGGCCAGCAAAGGGATCGG
AAGAGAGATGGCTTATCATCTGGCGAAGATGGGAGCCCATGTGGTGGTGACAGCGAGGTCAAAAGAAACT
CTACAGAAGGTGGTATCCCACTGCCTGGAGCTTGGAGCAGCCTCAGCACACTACATTGCTGGCACCATGG
AAGACATGACCTTCGCAGAGCAATTTGTTGCCCAAGCAGGAAAGCTCATGGGAGGACTAGACATGCTCAT
TCTCAACCACATCACCAACACTTCTTTGAATCTTTTTCATGATGATATTCACCATGTGCGCAAAAGCATG
GAAGTCAACTTCCTCAGTTACGTGGTCCTGACTGTAGCTGCCTTGCCCATGCTGAAGCAGAGCAATGGAA
GCATTGTTGTCGTCTCCTCTCTGGCTGGGAAAGTGGCTTATCCAATGGTTGCTGCCTATTCTGCAAGCAA
GTTTGCTTTGGATGGGTTCTTCTCCTCCATCAGAAAGGAATATTCAGTGTCCAGGGTCAATGTATCAATC
ACTCTCTGTGTTCTTGGCCTCATAGACACAGAAACAGCCATGAAGGCAGTTTCTGGGATAGTCCATATGC
AAGCAGCTCCAAAGGAGGAATGTGCCCTGGAGATCATCAAAGGGGGAGCTCTGCGCCAAGAAGAAGTGTA
TTATGACAGCTCACTCTGGACCACTCTTCTGATCAGAAATCCATGCAGGAAGATCCTGGAATTTCTCTAC
TCAACGAGCTATAATATGGACAGATTCATAAACAAGTAG

Translation (292 aa):
MAFMKKYLLPILGLFMAYYYYSANEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKET
LQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSM
EVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSI
TLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGGALRQEEVYYDSSLWTTLLIRNPCRKILEFLY
STSYNMDRFINK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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