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Report for CCDS14893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14893.1 Public Mus musculus 1 Mgat4a 23 108 98 CCDS HistoryNCBI Gene:269181Re-query CCDS DB by CCDS ID:14893.1Re-query CCDS DB by GeneID:269181See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14893.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042161.14 ENSMUSP00000038894.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042161.14Link to Ensembl Protein Viewer:ENSMUSP00000038894.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000042161Re-query CCDS DB by Protein ID:ENSMUSP00000038894
Original member Current member EBI ENSMUST00000151952.7 ENSMUSP00000114175.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151952.7Link to Ensembl Protein Viewer:ENSMUSP00000114175.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151952Re-query CCDS DB by Protein ID:ENSMUSP00000114175
Original member Current member NCBI NM_173870.3 NP_776295.1 Accepted alive Link to Nucleotide Sequence:NM_173870.3Link to Protein Sequence:NP_776295.1Re-query CCDS DB by Nucleotide ID:NM_173870Re-query CCDS DB by Protein ID:NP_776295Link to BLAST:NP_776295.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776295.1 535 Q812G0-1 535 100% 0 0

Chromosomal Locations for CCDS 14893.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37444659 37444685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37444807 37444919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37449096 37449162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37450329 37450407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37452231 37452424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37452522 37452629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37454744 37454874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37456590 37456704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37462892 37462967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37464421 37464534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37466537 37466583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37490260 37490393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37495873 37496013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37498573 37498740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37536039 37536132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGAGGCTCCGAAATGGAACTGTGGCCACTGCGCTGGTATTTGTCACGTCCTTCCTTACCCTATCCTGGT
ATACCACGTGGCAAAATGGGAAAGAAAAACTAATTGCTTATCAACGAGAATTCCTTGCTCTAAAAGAGCG
TCTTCGAGTGGCCGAGCATAGGATATCTCAGCGCTCCTCGGAGCTAAACACCATTGTCCAGCAGTTCCGC
AGAGCTGGAGCAGAGACTAATGGAAGTAAGACAGCTCTGAGTACAATCTCAGATAATACCATAAAGCTTC
TAAAAGAGTTGACAAGCAAAAAATCACTTCGAGTGCCAAGTATTTATTATCATTTGCCTCATCTATTGCA
AAATGAAAGAAGCCTTCAGCCCGCCGTACAGATTGGCAGTGGAAGAACGGGAGTTTCAATAGTTATGGGA
ATTCCTACTGTGAAGAGAGAAGTTAAATCTTACCTCGTAGAAACCCTTCACTCCCTTATTGATAATCTGT
ATCCTGAAGAGAAGCTGGACTGTGTTATAGTCGTCTTCATAGGAGAGACAGATCTTGATTATGTTCACAG
CGTTGTTGCCAACCTGGAGAAAGAATTTTCTAGAGAAATTAGTTCTGGCCTGCTGGAAATAATCTCTCCT
CCTGAAAGCTATTACCCCGACTTGACAAACCTGAAGGAGACGTTCGGAGACTCCAAGGAAAGAGTGAGAT
GGAGAACCAAGCAAAACCTGGATTACTGTTTTCTGATGATGTATGCTCAGGAGAAGGGCATCTACTACAT
TCAGCTTGAAGACGATATTATTGTCAAACAAAACTATTTTAATACCATAAAGAATTTTGCACTTCAACTT
TCTTCGGAAGAATGGATGATTCTAGAGTTTTCCCAGCTTGGCTTCATTGGAAAAATGTTCCAGGCGCCGG
ACCTGGCGCTGGTCGTGGAGTTCATCCTCATGTTCTATAAGGAGAAGCCCATTGACTGGCTGCTGGACCA
CATTCTCTGGGTGAAGGTCTGCAACCCCGAAAAAGATGCTAAACACTGCGACAGACAGAAGGCAAACCTA
CGAATCCGCTTCCGACCCTCCCTCTTCCAGCACGTGGGCCTACACTCGTCTCTGTCGGGGAAGATTCAGA
AACTCACGGATAAAGATTACATGAAGCCATTGCTTCTCAAGGTCCACGTGAACCCGCCTGCAGAGGTCTC
CACCTCCCTGAAGGTGTACCAAGGGCACACCCTGGAGAAGACCTACATGGGGGAAGACTTCTTTTGGGCC
ATCACCCCCACGGCTGGAGACTACATCTTGTTTAAATTTGACAAACCGGTCAACGTGGAGAGTTATTTGT
TCCACAGCGGCAATCAAGAGCACCCAGGAGACATCCTGCTGAACACGACCGTGGATGTTCTCCCTCTTAA
GAGCGACAGTTTGGAAATCAGCAAAGAAACCAAAGACAAACGATTAGAAGATGGCTATTTCAGAATAGGA
AAATTTGAGTATGGTGTTGCAGAGGGAATTGTGGATCCTGGTCTAAACCCTATTTCAGCCTTTCGACTTT
CCGTTATTCAGAACTCAGCTGTTTGGGCCATTCTTAATGAGATTCATATTAAAAAAGTCACCAGTTGA

Translation (535 aa):
MRLRNGTVATALVFVTSFLTLSWYTTWQNGKEKLIAYQREFLALKERLRVAEHRISQRSSELNTIVQQFR
RAGAETNGSKTALSTISDNTIKLLKELTSKKSLRVPSIYYHLPHLLQNERSLQPAVQIGSGRTGVSIVMG
IPTVKREVKSYLVETLHSLIDNLYPEEKLDCVIVVFIGETDLDYVHSVVANLEKEFSREISSGLLEIISP
PESYYPDLTNLKETFGDSKERVRWRTKQNLDYCFLMMYAQEKGIYYIQLEDDIIVKQNYFNTIKNFALQL
SSEEWMILEFSQLGFIGKMFQAPDLALVVEFILMFYKEKPIDWLLDHILWVKVCNPEKDAKHCDRQKANL
RIRFRPSLFQHVGLHSSLSGKIQKLTDKDYMKPLLLKVHVNPPAEVSTSLKVYQGHTLEKTYMGEDFFWA
ITPTAGDYILFKFDKPVNVESYLFHSGNQEHPGDILLNTTVDVLPLKSDSLEISKETKDKRLEDGYFRIG
KFEYGVAEGIVDPGLNPISAFRLSVIQNSAVWAILNEIHIKKVTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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